% !TEX encoding = UTF-8 Unicode
% !BIB TS-program = biber 
% !BIB program = biber    

% This file is MIT-Thesis.tex, a template for producing MIT theses with the mitthesis class.
% Version: 1.00, 2023/06/17
% Author: John H. Lienhard (c) 2023. Reuse under the MIT license: https://ctan.org/license/mit 

% Documentation: https://ctan.org/pkg/mitthesis

%% Don't modify the \DocumentMetadata command unless you know what it does. 
%% If this command throws an "undefined" error, your latex system is out of date: try commenting this command out.
\DocumentMetadata
{
	pdfstandard = a-2b,
	pdfversion  = 1.7,
	lang		= en-US,
%	debug		= {xmp-export}, % output xmpi file to directly examine metadata
}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\documentclass[fontset=termes-stix2]{mitthesis}
%
% option [twoside]		gives facing-page behavior for printing; omitting it will eliminate even-numbered blank pages.
% option [lineno]	 	provides line numbers, as for editing
% option [mydesign] 	loads titlesec, enumitem, caption, subcaption - you may edit the mydesign.tex file as you like it.
% option [fontset] is a keyvalue which can be:
%					 	pdftex or unicode engines:  defaultfonts, libertine, lucida
%					 	pdftex only: 				fira-newtxsf, newtx, newtx-sans-text
%						unicode engines (luatex):	heros-stix2, stix2, termes, termes-stix2
%					 	if no key value is given, fonts default to CMR (pdftex) or LMR (unicode), i.e., "the latex font".
%					 	You can edit the fontset files or you can write your own, myfonts.tex, and do [fontset=myfonts].
%						If you are using multiple languages, load the babel package in your fontset file, before the fonts.

%%%%%%%%% Packages used in sample chapters (not otherwise required) %%%%%%%

%% Package for code listing in Appendix A.
\usepackage{listings}

%% Set chemical formulas nicely
\usepackage[version=4]{mhchem}

%% Latin filler used in Chapter 1, with a test for package version date
\usepackage{lipsum}
\IfPackageAtLeastTF{lipsum}{2021/09/20}{\setlipsum{auto-lang=false}}{}


%%%%%%%%%  Graphics path (to figure files)  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% Can set graphicspath to point to specific directories containing figures (the current directory is searched automatically)
%% For instance, to search a subdirectory of the current directory called "figures" and a parallel directory called "art", set:

% \graphicspath{ {figures/} {../art/} }% For details see: https://latexref.xyz/dev/latex2e.html#g_t_005cgraphicspath


%%%%%%%%%  Representative set-up for biblatex  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\usepackage[style=ext-numeric-comp,giveninits=true,maxbibnames=10,sorting=none,articlein=false,]{biblatex}

\addbibresource{mitthesis-sample.bib}%% <== change to YOUR bib file <=================

%% These two commands enable line breaks in long URLs in the bibliography (delete if you don't want that)
\setcounter{biburllcpenalty}{7000}
\setcounter{biburlucpenalty}{8000}

% biblatex is very powerful, and you can customize most aspects the reference list and citations.


%%%%%%%%%%  Option to use natbib   %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%\RequirePackage[numbers,sort&compress]{natbib}
 
%%% add bibliography to table of contents
%\apptocmd{\bibliography}{\addcontentsline{toc}{chapter}{\protect\textbf{\bibname}}}{}{}

%%% You can use this to rename the bibliography section
%\renewcommand{\bibname}{References}

%%% Can adjust space between bibliography items (change 4pt to something else; don't drop last two lengths, they are stretchable "glue")
%\setlength\bibsep{4pt plus 1pt minus 1pt}


%%%%%%%%%%  Table related packages  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\usepackage{booktabs}% better quality tables
\usepackage{array}% additional options for table columns

%\usepackage{tabularx}

%\usepackage{dcolumn} % alignment on decimal places
%\newcolumntype{d}[1]{D{.}{.}{#1}}


%%%%%%%%%%  Option for "double spacing" %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% Back in the typewriter era, double spaced lines were convenient for editing with a pencil. 
%% In typography, the separation between lines is called "leading", and it is usually set in 
%% proportion to the font size (i.e., when the font is loaded).  If you really feel the need 
%% to change the line separation, the most attractive results will be obtained by changing the
%% leading in proportion to the the current font size, rather than just doubling the space.

%% The setspace package provides a tool for changing line separation (use these here)
%
%\usepackage{setspace}
%\setstretch{1.1}% you can choose some other value for the stretch of space between lines
%
%% Use the these commands AFTER the frontmatter
%
%\onehalfspacing
%\doublespacing
%\singlespacing  % will turn these effects off (you can use these anywhere in the document)

%% The best result may be to stay with leading selected by the typographer who set up the font.


%%%%%%%%%%%   Hyperref setting and metadata %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


\def\YourName{John H. Lienhard}% <====== CHANGE TO YOUR NAME !!!

\hypersetup{%
%
%   Be sure to change the following to your own information! <======== !!! 
%
	pdftitle={MIT thesis template},
	pdfkeywords={\YourName, Massachusetts Institute of Technology, MIT},
	pdfauthor={\YourName},
	pdfauthortitle={Professor of Mechanical Engineering},
	pdfcaptionwriter={\YourName},
%	pdfcaptionwriter={{John H. Lienhard, V}},% if you have a comma in your name, surround by {..}
	pdfurl={https://lienhard.mit.edu},
	pdfcontactemail={lienhard@mit.edu},
	pdfcontactaddress={77 Massachusetts Avenue, Room 3-166},
    pdfcontactcity={Cambridge, MA},
    pdfcontactpostcode={02139},
    pdfcontactcountry={USA},
    pdfcontacturl={https://lienhard.mit.edu},
%
    pdfsubject={Template for writing MIT theses with the mitthesis class},% briefly state what this document is about
%
	colorlinks=true,
	linkcolor=blue,
	citecolor=blue,
	urlcolor=violet,
	filecolor=red, 
%	anchorcolor=yellow,% not all pdf viewers recognize this field (Firefox does)
%	colorscheme=phelype,% overrides link, cite, url, file colors with a preset scheme, through \DocumentMetadata
%
 	pdfborder={0 0 0},
	bookmarksnumbered=true,
	bookmarksopen=true,
	bookmarksopenlevel=1,
%	pdfpagemode=UseNone,% this option means don't open bookmarks panel
	pdfpagelayout=SinglePage,
	pdfdisplaydoctitle=true,
	pdfstartview=Fit,
	pdfnewwindow=true,
%
    pdfcopyright={Copyright © \DegreeYear\ by \YourName. \PDFRightsText},% definitions made by class file, don't change
    pdflicenseurl={\CCurl},% definition made by class file, don't change
}
	
%%%%%%%%%%%%%%  End preamble %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


\begin{document}


%%% edit the following commands to match your thesis %%%%%%%%%%

\title{The Atomic Theory as Applied To Gases, with Some Experiments on the Viscosity of Air}

% \Author{Author full name}{Author department}[Author's first PREVIOUS degree][Author's second PREVIOUS degree][...
% Note that third, fourth, fifth, and sixth arguments are optional [] and may be omitted

% note on names: most of the following names are made up; Silas Holman was a professor at MIT in the 19th century.

\Author{Silas W. Holman}{Department of Physics}%[B.S. Physics, MIT, 1876]
%\Author{Luisa Hernández}{Department of Research}[B.S. Mechanical Engineering, UCLA, 2018][M.S. Stellar Interiors, Vulcan Science Academy, 2020][MBA, Ferengi School of Management, 2022]

% Use once for each degree fulfilled by thesis
\Degree{Bachelor of Science in Physics}{Department of Physics}
%\Degree{Bachelor of Science in Mechanical Engineering}{Department of Mechanical Engineering}

% If there is more than one supervisor, use the \Supervisor command for each.
\Supervisor{Edward C. Pickering}{Professor of Physics}
%\Supervisor{Secunda Castor}{Department of Mechanical Engineering}

% Professor who formally accepts theses for your department (e.g., the Graduate Officer, Professor Sméagol,...)
% If more than one department, use more than once
\Acceptor{Primus Castor}{Professor of Wetlands Engineering}{Graduate Officer, First Degree Department}
%\Acceptor{Tertius Castor}{Professor of Log Dams}{Graduate Officer, Second Degree Department}

% If your title page is overflowing (from too many names, degrees, etc.), you can scale 
%    down the Signature block at the bottom with this command, or use another creative solution...
%\SignatureBlockSize{\small}

% Usage: \DegreeDate{Month}{year}
% Valid degree months are September, February, or June.  
\DegreeDate{June}{1876}

% Date that final thesis is submitted to department
\ThesisDate{May 18, 1876}


%%%%%%  Choose whether to have a CREATIVE COMMONS License  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%
% If you are using a cc license, put details of your cc license here. 
% Omit this command if you are not using a cc license.
%
\CClicense{CC BY-NC-ND 4.0}{https://creativecommons.org/licenses/by-nc-nd/4.0/}
%
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%%% Titlepage
\maketitle
	\cleardoublepage% for two-sided printing, this puts abstract on a right-hand (odd) page, possibly inserting a blank page
					% if the the class option [twoside] is omitted, the command just begins a new page 


%%%%%%%%% Contents that you need to write follows %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% \includeonly{acknowledgments,biography,chapter1,chapter2,...,appendixa,...} 
%   for usage, see https://latexref.xyz/dev/latex2e.html#g_t_005cinclude-_0026-_005cincludeonly

%%% Frontmatter (write this material in the mentioned files)  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%


% The abstract environment creates all the required headers and footnote. 
% You only need to add the text of the abstract itself in the file abstract.tex
\begin{abstract}
	\input{abstract.tex}% in this case, use \input rather than \include because you are inside an environment
\end{abstract}
	\cleardoublepage

\include{acknowledgments.tex}%
	\cleardoublepage

\include{biography.tex}% optional, see MIT Libraries https://libraries.mit.edu/distinctive-collections/thesis-specs/#format
	\cleardoublepage


%%% Table of contents and lists of stuff (edit only if you want different lists) %%%%%%%%%%%%%%%%

	\pdfbookmark[0]{Table of Contents}{toc}%
\tableofcontents
	\cleardoublepage
	
	\phantomsection
\listoffigures
	\addcontentsline{toc}{chapter}{\protect\textbf{\listfigurename}}%
	\cleardoublepage
	
	\phantomsection
\listoftables
	\addcontentsline{toc}{chapter}{\protect\textbf{\listtablename}}%
	\cleardoublepage


%%% Chapters of thesis  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

%% If you really feel the need to engage in "double spacing", you can start here...

\include{chapter1.tex}
%\include{chapter2.tex}
%\include{chapter3.tex}


%%% Appendicies of thesis  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\appendix
\include{appendixa.tex}


%%% Bibliography  %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

{\raggedright% to avoid stretched white space and split urls; DELETE if you prefer justified text
%
\printbibliography[title={References},heading=bibintoc]
}
% biblatex also supports chapter-by-chapter bibliography, https://tex.stackexchange.com/a/296502/119566
% see the biblatex manual, section 3.14.3


%%%% Option for natbib %%%%%%%%%%%%%
%%   use an appropriate style (.bst) and your own .bib file[s]

%\bibliographystyle{plainnat}
%\bibliography{mitthesis-sample.bib}

\end{document} 
 