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CRAN Package Check Results for Maintainer ‘Martí Català <marti.catalasabate at ndorms.ox.ac.uk>’

Last updated on 2026-06-19 23:52:35 CEST.

Package ERROR OK
CohortCharacteristics 13
DrugUtilisation 13
OmopConstructor 13
omopgenerics 13
OmopViewer 2 11
PatientProfiles 13

Package CohortCharacteristics

Current CRAN status: OK: 13

Package DrugUtilisation

Current CRAN status: OK: 13

Package OmopConstructor

Current CRAN status: OK: 13

Package omopgenerics

Current CRAN status: OK: 13

Package OmopViewer

Current CRAN status: ERROR: 2, OK: 11

Version: 0.7.0
Check: tests
Result: ERROR Running ‘testthat.R’ [65s/68s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(OmopViewer) > > test_check("OmopViewer") Starting 2 test processes. > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-background.R: i Processing data > test-background.R: ! No panels identified, generated shiny will be empty. > test-background.R: i Creating `shiny` from provided data > test-background.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmpKYpaW6/shiny > test-background.R: i Processing data > test-background.R: ! No panels identified, generated shiny will be empty. > test-background.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmplYEuIi/shiny > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-background.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmpKYpaW6/shiny > test-background.R: i Processing data > test-background.R: ! No panels identified, generated shiny will be empty. > test-background.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmplYEuIi/shiny > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-background.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmpKYpaW6/shiny > test-appStatic.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmplYEuIi/shiny > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmplYEuIi/shiny > test-appStatic.R: trying URL 'https://www.ema.europa.eu/sites/default/files/styles/oe_bootstrap_theme_medium_no_crop/public/2024-07/DARWINEU_logo_LARGE.png?itok=NtwlLhSX' > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-summary.R: `result_type`, `package_name`, and `package_version` added to settings. > test-appStatic.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmplYEuIi/shiny > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-summary.R: `package_name` and `package_version` added to settings. > test-appStatic.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmplYEuIi/shiny > test-appStatic.R: `package_name` and `package_version` added to settings. > test-appStatic.R: i Processing data > test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`. > test-appStatic.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpJHZQOY/working_dir/RtmplYEuIi/shiny Saving _problems/test-appStatic-41.R [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-packagesSupported.R:2:3', 'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3' • manual test (1): 'test-functions.R:3:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-appStatic.R:41:3'): logo ─────────────────────────────────────── Error in `utils::download.file(url = url, destfile = tf, mode = "wb")`: cannot open URL 'https://www.ema.europa.eu/sites/default/files/styles/oe_bootstrap_theme_medium_no_crop/public/2024-07/DARWINEU_logo_LARGE.png?itok=NtwlLhSX' Backtrace: ▆ 1. ├─testthat::expect_identical(...) at test-appStatic.R:41:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─OmopViewer:::copyLogos(logo = logo, directory = tdir) 5. └─OmopViewer:::downloadLogo(url = logo, directory = directory) 6. └─utils::download.file(url = url, destfile = tf, mode = "wb") [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 0.7.0
Check: tests
Result: ERROR Running ‘testthat.R’ [66s/68s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(OmopViewer) > > test_check("OmopViewer") Starting 2 test processes. > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-background.R: i Processing data > test-background.R: ! No panels identified, generated shiny will be empty. > test-background.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/RtmpDdvqWK/shiny > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-background.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/Rtmpi24FVl/shiny > test-background.R: i Processing data > test-background.R: ! No panels identified, generated shiny will be empty. > test-background.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/RtmpDdvqWK/shiny > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-background.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/Rtmpi24FVl/shiny > test-background.R: i Processing data > test-background.R: ! No panels identified, generated shiny will be empty. > test-background.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/RtmpDdvqWK/shiny > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-background.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/Rtmpi24FVl/shiny > test-appStatic.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/RtmpDdvqWK/shiny > test-appStatic.R: trying URL 'https://www.ema.europa.eu/sites/default/files/styles/oe_bootstrap_theme_medium_no_crop/public/2024-07/DARWINEU_logo_LARGE.png?itok=NtwlLhSX' > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/RtmpDdvqWK/shiny > test-appStatic.R: i Processing data > test-appStatic.R: ! No panels identified, generated shiny will be empty. > test-appStatic.R: i Creating `shiny` from provided data > test-appStatic.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/RtmpDdvqWK/shiny > test-summary.R: `result_type`, `package_name`, and `package_version` added to settings. > test-appStatic.R: `package_name` and `package_version` added to settings. > test-appStatic.R: i Processing data > test-appStatic.R: v Data processed: 1 panel idenfied: `custom_result`. > test-appStatic.R: i Creating `shiny` from provided data > test-summary.R: `package_name` and `package_version` added to settings. > test-appStatic.R: v Shiny created in: /tmp/RtmpZi1vpQ/working_dir/RtmpDdvqWK/shiny Saving _problems/test-appStatic-41.R [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ] ══ Skipped tests (5) ═══════════════════════════════════════════════════════════ • On CRAN (4): 'test-packagesSupported.R:2:3', 'test-appStatic.R:46:1', 'test-appStatic.R:60:1', 'test-appStatic.R:80:3' • manual test (1): 'test-functions.R:3:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-appStatic.R:41:3'): logo ─────────────────────────────────────── Error in `utils::download.file(url = url, destfile = tf, mode = "wb")`: cannot open URL 'https://www.ema.europa.eu/sites/default/files/styles/oe_bootstrap_theme_medium_no_crop/public/2024-07/DARWINEU_logo_LARGE.png?itok=NtwlLhSX' Backtrace: ▆ 1. ├─testthat::expect_identical(...) at test-appStatic.R:41:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. └─OmopViewer:::copyLogos(logo = logo, directory = tdir) 5. └─OmopViewer:::downloadLogo(url = logo, directory = directory) 6. └─utils::download.file(url = url, destfile = tf, mode = "wb") [ FAIL 1 | WARN 17 | SKIP 5 | PASS 83 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Package PatientProfiles

Current CRAN status: OK: 13

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.