CRAN Package Check Results for Maintainer ‘Martí Català <marti.catalasabate at ndorms.ox.ac.uk>’

Last updated on 2026-05-20 23:50:48 CEST.

Package	ERROR	OK
CohortCharacteristics	1	12
DrugUtilisation	2	11
OmopConstructor	1	12
omopgenerics		13
OmopViewer		13
PatientProfiles	1	12

Package CohortCharacteristics

Current CRAN status: ERROR: 1, OK: 12

Version: 1.1.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘summarise_characteristics.Rmd’ using rmarkdown Quitting from summarise_characteristics.Rmd:24-49 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_characteristics.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘summarise_characteristics.Rmd’ --- re-building ‘summarise_cohort_overlap.Rmd’ using rmarkdown Quitting from summarise_cohort_overlap.Rmd:27-57 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_cohort_overlap.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘summarise_cohort_overlap.Rmd’ --- re-building ‘summarise_cohort_timing.Rmd’ using rmarkdown Quitting from summarise_cohort_timing.Rmd:25-55 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_cohort_timing.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘summarise_cohort_timing.Rmd’ --- re-building ‘summarise_large_scale_characteristics.Rmd’ using rmarkdown Quitting from summarise_large_scale_characteristics.Rmd:31-48 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise_large_scale_characteristics.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘summarise_large_scale_characteristics.Rmd’ SUMMARY: processing the following files failed: ‘summarise_characteristics.Rmd’ ‘summarise_cohort_overlap.Rmd’ ‘summarise_cohort_timing.Rmd’ ‘summarise_large_scale_characteristics.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Package DrugUtilisation

Current CRAN status: ERROR: 2, OK: 11

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘create_cohorts.Rmd’ using rmarkdown Quitting from create_cohorts.Rmd:43-51 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockDrugUtilisation()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'create_cohorts.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘create_cohorts.Rmd’ --- re-building ‘drug_utilisation.Rmd’ using rmarkdown Quitting from drug_utilisation.Rmd:31-41 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockDrugUtilisation()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'drug_utilisation.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘drug_utilisation.Rmd’ SUMMARY: processing the following files failed: ‘create_cohorts.Rmd’ ‘drug_utilisation.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Version: 1.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘create_cohorts.Rmd’ using rmarkdown Quitting from create_cohorts.Rmd:450-460 [unnamed-chunk-27] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'CohortConstructor' --- Backtrace: ▆ 1. └─base::library(CohortConstructor) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'create_cohorts.Rmd' failed with diagnostics: there is no package called 'CohortConstructor' --- failed re-building ‘create_cohorts.Rmd’ --- re-building ‘drug_utilisation.Rmd’ using rmarkdown --- finished re-building ‘drug_utilisation.Rmd’ SUMMARY: processing the following file failed: ‘create_cohorts.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-macos-arm64

Package OmopConstructor

Current CRAN status: ERROR: 1, OK: 12

Version: 0.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘achilles.Rmd’ using rmarkdown Quitting from achilles.Rmd:114-125 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'achilles.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘achilles.Rmd’ --- re-building ‘buildObservationPeriod.Rmd’ using rmarkdown Quitting from buildObservationPeriod.Rmd:161-171 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'buildObservationPeriod.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘buildObservationPeriod.Rmd’ SUMMARY: processing the following files failed: ‘achilles.Rmd’ ‘buildObservationPeriod.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Package omopgenerics

Current CRAN status: OK: 13

Package OmopViewer

Current CRAN status: OK: 13

Package PatientProfiles

Current CRAN status: ERROR: 1, OK: 12

Version: 1.5.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘cohort-intersect.Rmd’ using rmarkdown Quitting from cohort-intersect.Rmd:22-36 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `loadNamespace()`: ! there is no package called 'duckdb' --- Backtrace: ▆ 1. ├─PatientProfiles::mockPatientProfiles(...) 2. │ └─CDMConnector::dbSource(...) 3. │ └─methods::is(con, "Pool") 4. └─base::loadNamespace(x) 5. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL) 6. └─base (local) withOneRestart(expr, restarts[[1L]]) 7. └─base (local) doWithOneRestart(return(expr), restart) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'cohort-intersect.Rmd' failed with diagnostics: there is no package called 'duckdb' --- failed re-building ‘cohort-intersect.Rmd’ --- re-building ‘concept-intersect.Rmd’ using rmarkdown Quitting from concept-intersect.Rmd:35-52 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'concept-intersect.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘concept-intersect.Rmd’ --- re-building ‘demographics.rmd’ using rmarkdown Quitting from demographics.rmd:19-28 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'duckdb' --- Backtrace: ▆ 1. └─base::library(duckdb) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'demographics.rmd' failed with diagnostics: there is no package called 'duckdb' --- failed re-building ‘demographics.rmd’ --- re-building ‘summarise.Rmd’ using rmarkdown Quitting from summarise.Rmd:78-130 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'summarise.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘summarise.Rmd’ --- re-building ‘table-intersect.Rmd’ using rmarkdown Quitting from table-intersect.Rmd:34-57 [unnamed-chunk-3] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlib_error_package_not_found> Error in `mockCdmFromDataset()`: ! The package "duckdb" is required. ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'table-intersect.Rmd' failed with diagnostics: The package "duckdb" is required. --- failed re-building ‘table-intersect.Rmd’ SUMMARY: processing the following files failed: ‘cohort-intersect.Rmd’ ‘concept-intersect.Rmd’ ‘demographics.rmd’ ‘summarise.Rmd’ ‘table-intersect.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64