CRAN Package Check Results for Package BoolNet

Last updated on 2024-11-21 19:52:31 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.1.9	19.82	71.65	91.47	NOTE
r-devel-linux-x86_64-debian-gcc	2.1.9	13.81	50.53	64.34	NOTE
r-devel-linux-x86_64-fedora-clang	2.1.9			150.51	NOTE
r-devel-linux-x86_64-fedora-gcc	2.1.9			157.71	NOTE
r-devel-windows-x86_64	2.1.9	26.00	116.00	142.00	NOTE
r-patched-linux-x86_64	2.1.9	21.13	68.37	89.50	NOTE
r-release-linux-x86_64	2.1.9	18.89	69.17	88.06	NOTE
r-release-macos-arm64	2.1.9			51.00	NOTE
r-release-macos-x86_64	2.1.9			74.00	NOTE
r-release-windows-x86_64	2.1.9	25.00	114.00	139.00	NOTE
r-oldrel-macos-arm64	2.1.9			48.00	OK
r-oldrel-macos-x86_64	2.1.9			183.00	OK
r-oldrel-windows-x86_64	2.1.9	29.00	122.00	151.00	OK

Check Details

Version: 2.1.9
Check: Rd files
Result: NOTE checkRd: (-1) getPathToAttractor.Rd:23: Lost braces; missing escapes or markup? 23 | Specifies whether the actual attractor states are included in the resulting table or not. If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. This corresponds to the behaviour prior to \pkg{BoolNet} version 1.5. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. In this case, the sequence can be empty if the start state is an attractor state. | ^ checkRd: (-1) plotSequence.Rd:42: Lost braces; missing escapes or markup? 42 | Specifies whether the actual attractor states are included in the plot or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) sequenceToLaTeX.Rd:37: Lost braces; missing escapes or markup? 37 | Specifies whether the actual attractor states are included in the table or not (see also \code{\link{getPathToAttractor}}). If \code{includeAttractorStates = "all"} (which is the default behaviour), the sequence ends when the attractor was traversed once. If \code{includeAttractorStates = "first"}, only the first state of attractor is added to the sequence. If {includeAttractorStates = "none"}, the sequence ends with the last non-attractor state. | ^ checkRd: (-1) simulateSymbolicModel.Rd:64: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:66-70: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulateSymbolicModel.Rd:72-73: Lost braces in \itemize; meant \describe ? checkRd: (-1) testNetworkProperties.Rd:131: Lost braces; missing escapes or markup? 131 | If {perturb="functions"} or \code{perturb="transitions"} and \code{accumulate=FALSE}, the function returns a vector of percentages of original attractors found in each of the perturbed copies of the original network. If \code{accumulate=TRUE}, the function returns the overall percentage of original attractors found in all perturbed copies. | ^ checkRd: (-1) testNetworkProperties.Rd:140: Lost braces 140 | code{params} can hold parameters \code{numSamples, flipBits} corresponding to the parameters of \code{\link{perturbTrajectories}} that define how many initial states are drawn and how many bits are flipped. | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64