CRAN Package Check Results for Package MetaComp

Last updated on 2025-11-13 21:50:01 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.1.2	4.80	68.48	73.28	OK
r-devel-linux-x86_64-debian-gcc	1.1.2	3.70	46.71	50.41	OK
r-devel-linux-x86_64-fedora-clang	1.1.2	32.00	82.91	114.91	OK
r-devel-linux-x86_64-fedora-gcc	1.1.2	17.00	92.49	109.49	ERROR
r-devel-windows-x86_64	1.1.2	9.00	74.00	83.00	OK
r-patched-linux-x86_64	1.1.2	5.32	60.20	65.52	OK
r-release-linux-x86_64	1.1.2	5.46	60.06	65.52	OK
r-release-macos-arm64	1.1.2	3.00	29.00	32.00	OK
r-release-macos-x86_64	1.1.2	4.00	46.00	50.00	OK
r-release-windows-x86_64	1.1.2	9.00	71.00	80.00	OK
r-oldrel-macos-arm64	1.1.2	2.00	26.00	28.00	NOTE
r-oldrel-macos-x86_64	1.1.2	3.00	42.00	45.00	NOTE
r-oldrel-windows-x86_64	1.1.2	10.00	95.00	105.00	NOTE

Check Details

Version: 1.1.2
Check: tests
Result: ERROR Running ‘testthat.R’ [34s/83s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(MetaComp) > > test_check("MetaComp") [1] "gottcha" [1] "kraken" Saving _problems/test_load_metaphlan_assignment-14.R Saving _problems/test_pipeline-37.R Saving _problems/test_plot_bwa_assignment-31.R Saving _problems/test_plot_diamond_assignment-31.R Saving _problems/test_plot_gottcha_assignment-31.R Saving _problems/test_plot_kraken_assignment-31.R Saving _problems/test_plot_merged_assignment_b-80.R Saving _problems/test_plot_merged_assignment_d-80.R Saving _problems/test_plot_merged_assignment_g-78.R Saving _problems/test_plot_merged_assignment_g2-78.R Saving _problems/test_plot_merged_assignment_k-80.R Saving _problems/test_plot_merged_assignment_m-80.R Saving _problems/test_plot_merged_assignment_p-81.R Saving _problems/test_plot_metaphlan_assignment-31.R Saving _problems/test_plot_pangia_assignment-31.R [ FAIL 15 | WARN 18 | SKIP 0 | PASS 108 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ── Error in `matches("LEVEL")`: could not find function "matches" Backtrace: ▆ 1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1 ── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ───────── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(...) at test_pipeline.R:37:1 ── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1 ── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1 ── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1 ── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1 ── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1 ── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1 ── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1 ── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1 ── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1 ── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1 ── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1 ── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1 ── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ── Error in `is_true()`: could not find function "is_true" Backtrace: ▆ 1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1 [ FAIL 15 | WARN 18 | SKIP 0 | PASS 108 ] Error: ! Test failures. Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.1.2
Check: LazyData
Result: NOTE 'LazyData' is specified without a 'data' directory Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64