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Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, MetaPhlAn, DIAMOND, and Pangia. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.
| Version: | 1.1.2 |
| Depends: | R (≥ 3.1.0) |
| Imports: | reshape2, plyr, dplyr, data.table, ggplot2, Cairo |
| Suggests: | testthat |
| Published: | 2018-06-18 |
| DOI: | 10.32614/CRAN.package.MetaComp |
| Author: | Pavel Senin [aut, cre] |
| Maintainer: | Pavel Senin <senin at hawaii.edu> |
| BugReports: | https://github.com/seninp-bioinfo/MetaComp/issues |
| License: | GPL-2 |
| URL: | https://github.com/seninp-bioinfo/MetaComp |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | MetaComp results |
| Reference manual: | MetaComp.pdf |
| Package source: | MetaComp_1.1.2.tar.gz |
| Windows binaries: | r-devel: MetaComp_1.1.2.zip, r-release: MetaComp_1.1.2.zip, r-oldrel: MetaComp_1.1.2.zip |
| macOS binaries: | r-release (arm64): MetaComp_1.1.2.tgz, r-oldrel (arm64): MetaComp_1.1.2.tgz, r-release (x86_64): MetaComp_1.1.2.tgz, r-oldrel (x86_64): MetaComp_1.1.2.tgz |
| Old sources: | MetaComp archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.