CRAN Package Check Results for Package TBRDist

Last updated on 2026-08-29 05:50:42 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	2.0.1	54.35	57.19	111.54	OK
r-devel-linux-x86_64-debian-gcc	2.0.1	47.72	45.58	93.30	OK
r-devel-linux-x86_64-fedora-clang	2.0.1	38.00	41.77	79.77	ERROR
r-devel-linux-x86_64-fedora-gcc	2.0.1	62.00	49.77	111.77	OK
r-devel-windows-x86_64	2.0.1	69.00	172.00	241.00	OK
r-patched-linux-x86_64	2.0.1	57.84	53.36	111.20	OK
r-release-linux-x86_64	2.0.1	64.91	53.75	118.66	OK
r-release-macos-arm64	2.0.1	13.00	18.00	31.00	OK
r-release-macos-x86_64	2.0.1	46.00	113.00	159.00	OK
r-release-windows-x86_64	2.0.1	67.00	101.00	168.00	OK
r-oldrel-macos-arm64	2.0.1	13.00	21.00	34.00	OK
r-oldrel-macos-x86_64	2.0.1	46.00	185.00	231.00	OK
r-oldrel-windows-x86_64	2.0.1	91.00	120.00	211.00	OK

Check Details

Version: 2.0.1
Check: examples
Result: ERROR Running examples in ‘TBRDist-Ex.R’ failed The error most likely occurred in: > ### Name: RSPRDist > ### Title: Calculate rSPR distance between rooted trees > ### Aliases: RSPRDist > > ### ** Examples > > library(ape) > set.seed(1) > tree1 <- rtree(8) > tree2 <- rtree(8) > tree1$tip.label <- tree2$tip.label <- paste0("t", 1:8) > > RSPRDist(tree1, tree2) *** caught segfault *** address (nil), cause 'memory not mapped' Traceback: 1: rspr_dist(treeLists[[1]], treeLists[[2]], approx = approx, exact = !approx) 2: RSPRDist(tree1, tree2) An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-clang

Version: 2.0.1
Check: tests
Result: ERROR Running ‘testthat.R’ Running the tests in ‘tests/testthat.R’ failed. Complete output: > library('testthat') > library('TBRDist') > > test_check("TBRDist") *** caught segfault *** address (nil), cause 'memory not mapped' Traceback: 1: rspr_dist(treeLists[[1]], treeLists[[2]], approx = approx, exact = !approx) 2: RSPRDist(t, t) 3: eval_bare(expr, quo_get_env(quo)) 4: quasi_label(enquo(object), label) 5: expect_identical(RSPRDist(t, t), 0L) 6: eval(code, test_env) 7: eval(code, test_env) 8: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt) 9: doTryCatch(return(expr), name, parentenv, handler) 10: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 11: tryCatchList(expr, classes, parentenv, handlers) 12: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal) 13: doWithOneRestart(return(expr), restart) 14: withOneRestart(expr, restarts[[1L]]) 15: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { }) 16: test_code(code, parent.frame()) 17: test_that("distance between identical trees is 0", { t <- Tree("((((1,2),(3,4)),((5,6),(7,8))),(((9,10),(11,12)),((13,14),(15,16))));") expect_identical(RSPRDist(t, t), 0L)}) 18: eval(code, test_env) 19: eval(code, test_env) 20: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt) 21: doTryCatch(return(expr), name, parentenv, handler) 22: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 23: tryCatchList(expr, classes, parentenv, handlers) 24: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal) 25: doWithOneRestart(return(expr), restart) 26: withOneRestart(expr, restarts[[1L]]) 27: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { }) 28: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new()) 29: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call) 30: FUN(X[[i]], ...) 31: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call) 32: doTryCatch(return(expr), name, parentenv, handler) 33: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 34: tryCatchList(expr, classes, parentenv, handlers) 35: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL}) 36: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)) 37: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call) 38: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle) 39: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed") 40: test_check("TBRDist") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-clang