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TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees
Fast calculation of the Subtree Prune and Regraft (SPR),
Tree Bisection and Reconnection (TBR) and Replug distances between
unrooted trees, using the algorithms of Whidden and
Matsen (2017) <doi:10.48550/arXiv.1511.07529>.
| Version: |
1.0.2 |
| Depends: |
R (≥ 3.4.0) |
| Imports: |
ape, Rdpack, TreeDist, TreeTools (≥ 1.1.0) |
| LinkingTo: |
BH, Rcpp |
| Suggests: |
knitr, rmarkdown, testthat |
| Published: |
2020-09-17 |
| DOI: |
10.32614/CRAN.package.TBRDist |
| Author: |
Martin R. Smith 
[aut, cre, cph],
Chris Whidden [cph] |
| Maintainer: |
Martin R. Smith <martin.smith at durham.ac.uk> |
| BugReports: |
https://github.com/ms609/TBRDist/issues/ |
| License: |
GPL (≥ 3) |
| Copyright: |
Underlying C++ code copyright 2018 Chris Whidden. |
| URL: |
https://ms609.github.io/TBRDist/,
https://github.com/ms609/TBRDist/,
https://github.com/cwhidden/uspr/ |
| NeedsCompilation: |
yes |
| SystemRequirements: |
C++11 |
| Language: |
en-GB |
| Citation: |
TBRDist citation info |
| Materials: |
NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
TBRDist results |
Documentation:
Downloads:
Linking:
Please use the canonical form
https://CRAN.R-project.org/package=TBRDist
to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.