CRAN Package Check Results for Maintainer ‘Chao Liu <chaoliu at cedarville.edu>’

Last updated on 2025-11-11 15:51:01 CET.

Package	ERROR	OK
conversim		13
Goodreader		13
LBDiscover		13
searchAnalyzeR	2	11
textAnnotatoR		13

Package conversim

Current CRAN status: OK: 13

Package Goodreader

Current CRAN status: OK: 13

Package LBDiscover

Current CRAN status: OK: 13

Package searchAnalyzeR

Current CRAN status: ERROR: 2, OK: 11

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘Comparing_Search_Strategies_with_searchAnalyzeR.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘Comparing_Search_Strategies_with_searchAnalyzeR.Rmd’ --- re-building ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’ using rmarkdown Quitting from Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd:106-117 [execute-search] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `read_xml.raw()`: ! Premature end of data in tag PubmedArticleSet line 3 [77] --- Backtrace: ▆ 1. └─searchAnalyzeR::search_pubmed(...) 2. ├─xml2::read_xml(abstracts) 3. └─xml2:::read_xml.character(abstracts) 4. └─xml2:::read_xml.raw(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' failed with diagnostics: Premature end of data in tag PubmedArticleSet line 3 [77] --- failed re-building ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’ SUMMARY: processing the following file failed: ‘Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' using rmarkdown Quitting from Comparing_Search_Strategies_with_searchAnalyzeR.Rmd:130-150 [execute_searches] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- Backtrace: ▆ 1. ├─searchAnalyzeR::search_pubmed(...) 2. │ └─rentrez::entrez_search(...) 3. │ └─rentrez:::parse_response(response, retmode) 4. │ └─XML::xmlTreeParse(x, useInternalNodes = TRUE) 5. └─XML (local) `<fn>`(`<chr>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' failed with diagnostics: 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- failed re-building 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' --- re-building 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' using rmarkdown Quitting from Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd:106-117 [execute-search] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- Backtrace: ▆ 1. ├─searchAnalyzeR::search_pubmed(...) 2. │ └─rentrez::entrez_search(...) 3. │ └─rentrez:::parse_response(response, retmode) 4. │ └─XML::xmlTreeParse(x, useInternalNodes = TRUE) 5. └─XML (local) `<fn>`(`<chr>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' failed with diagnostics: 1: Opening and ending tag mismatch: br line 47 and p 2: Opening and ending tag mismatch: br line 47 and section 3: Opening and ending tag mismatch: p line 44 and main 4: Opening and ending tag mismatch: br line 180 and a 5: Opening and ending tag mismatch: a line 180 and p 6: Opening and ending tag mismatch: br line 179 and div 7: Opening and ending tag mismatch: br line 185 and p 8: Opening and ending tag mismatch: br line 184 and div 9: Opening and ending tag mismatch: br line 190 and p 10: Opening and ending tag mismatch: br line 189 and div 11: Opening and ending tag mismatch: p line 189 and div 12: Opening and ending tag mismatch: p line 184 and section 13: Opening and ending tag mismatch: div line 183 and footer 14: Opening and ending tag mismatch: p line 179 and body 15: Opening and ending tag mismatch: div line 178 and html --- failed re-building 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' SUMMARY: processing the following files failed: 'Comparing_Search_Strategies_with_searchAnalyzeR.Rmd' 'Real_PubMed_Search_Analysis_with_searchAnalyzeR.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-release-windows-x86_64

Package textAnnotatoR

Current CRAN status: OK: 13