CRAN Package Check Results for Maintainer ‘Daniel P. Smith <dansmith at orst.edu>’

Last updated on 2024-09-01 05:49:47 CEST.

Package	FAIL	NOTE	OK
rbiom	3	2	8

Package rbiom

Current CRAN status: FAIL: 3, NOTE: 2, OK: 8

Additional issues

noSuggests

Version: 1.0.3
Check: C++ specification
Result: NOTE Specified C++11: please drop specification unless essential Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64

Version: 1.0.3
Check: examples
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > > ### ** Examples > > library(rbiom) > > infile <- system.file("extdata", "newick.tre", package = "rbiom") > tree <- read.tree(infile) > > leafs <- tips(tree) > subtree <- subtree(tree, head(leafs)) > > > > > cleanEx() > nameEx("taxa.names") > ### * taxa.names > > flush(stderr()); flush(stdout()) > > ### Name: taxa.names > ### Title: Get the taxa names. > ### Aliases: taxa.names > > ### ** Examples > > library(rbiom) > > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom") > biom <- read.biom(infile) ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-devel-windows-x86_64

Version: 1.0.3
Check: examples
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > > library(rbiom) > > infile <- system.file("extdata", "newick.tre", package = "rbiom") > tree <- read.tree(infile) > > tree <- read.tree(" + (t9:0.99,((t5:0.87,t2:0.89):0.51,(((t10:0.16,(t7:0.83,t4:0.96) + :0.94):0.69,(t6:0.92,(t3:0.62,t1:0.85):0.54):0.23):0.74,t8:0.1 + 2):0.43):0.67);") > > > > > cleanEx() > nameEx("sample.names") > ### * sample.names > > flush(stderr()); flush(stdout()) > > ### Name: sample.names > ### Title: Get the sample names. > ### Aliases: sample.names > > ### ** Examples > > library(rbiom) > > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom") > biom <- read.biom(infile) ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-release-windows-x86_64

Version: 1.0.3
Check: package dependencies
Result: NOTE Package suggested but not available for checking: ‘rhdf5’ Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.0.3
Check: examples
Result: FAIL Check process probably crashed or hung up for 20 minutes ... killed Most likely this happened in the example checks (?), if not, ignore the following last lines of example output: > ### ** Examples > > library(rbiom) > > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom") > biom <- read.biom(infile) > > taxa.ranks(biom) [1] "Kingdom" "Phylum" "Class" "Order" "Family" "Genus" > > > > > cleanEx() > nameEx("taxa.rollup") > ### * taxa.rollup > > flush(stderr()); flush(stdout()) > > ### Name: taxa.rollup > ### Title: Generate a matrix of samples by taxa, at the specified taxonomic > ### rank. > ### Aliases: taxa.rollup > > ### ** Examples > > library(rbiom) > > infile <- system.file("extdata", "hmp50.bz2", package = "rbiom") > biom <- read.biom(infile) ======== End of example output (where/before crash/hang up occured ?) ======== Flavor: r-oldrel-windows-x86_64