Last updated on 2024-09-01 05:49:47 CEST.
Package | FAIL | NOTE | OK |
---|---|---|---|
rbiom | 3 | 2 | 8 |
Current CRAN status: FAIL: 3, NOTE: 2, OK: 8
Version: 1.0.3
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0.3
Check: examples
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
>
> ### ** Examples
>
> library(rbiom)
>
> infile <- system.file("extdata", "newick.tre", package = "rbiom")
> tree <- read.tree(infile)
>
> leafs <- tips(tree)
> subtree <- subtree(tree, head(leafs))
>
>
>
>
> cleanEx()
> nameEx("taxa.names")
> ### * taxa.names
>
> flush(stderr()); flush(stdout())
>
> ### Name: taxa.names
> ### Title: Get the taxa names.
> ### Aliases: taxa.names
>
> ### ** Examples
>
> library(rbiom)
>
> infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
> biom <- read.biom(infile)
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-devel-windows-x86_64
Version: 1.0.3
Check: examples
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
>
> library(rbiom)
>
> infile <- system.file("extdata", "newick.tre", package = "rbiom")
> tree <- read.tree(infile)
>
> tree <- read.tree("
+ (t9:0.99,((t5:0.87,t2:0.89):0.51,(((t10:0.16,(t7:0.83,t4:0.96)
+ :0.94):0.69,(t6:0.92,(t3:0.62,t1:0.85):0.54):0.23):0.74,t8:0.1
+ 2):0.43):0.67);")
>
>
>
>
> cleanEx()
> nameEx("sample.names")
> ### * sample.names
>
> flush(stderr()); flush(stdout())
>
> ### Name: sample.names
> ### Title: Get the sample names.
> ### Aliases: sample.names
>
> ### ** Examples
>
> library(rbiom)
>
> infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
> biom <- read.biom(infile)
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64
Version: 1.0.3
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘rhdf5’
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.0.3
Check: examples
Result: FAIL
Check process probably crashed or hung up for 20 minutes ... killed
Most likely this happened in the example checks (?),
if not, ignore the following last lines of example output:
> ### ** Examples
>
> library(rbiom)
>
> infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
> biom <- read.biom(infile)
>
> taxa.ranks(biom)
[1] "Kingdom" "Phylum" "Class" "Order" "Family" "Genus"
>
>
>
>
> cleanEx()
> nameEx("taxa.rollup")
> ### * taxa.rollup
>
> flush(stderr()); flush(stdout())
>
> ### Name: taxa.rollup
> ### Title: Generate a matrix of samples by taxa, at the specified taxonomic
> ### rank.
> ### Aliases: taxa.rollup
>
> ### ** Examples
>
> library(rbiom)
>
> infile <- system.file("extdata", "hmp50.bz2", package = "rbiom")
> biom <- read.biom(infile)
======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.