CRAN Package Check Results for Maintainer ‘Davide Chicco <davidechicco at davidechicco.it>’

Last updated on 2025-04-10 08:58:57 CEST.

Package	ERROR	NOTE	OK
DBCVindex			14
geneExpressionFromGEO	2	2	11
SaturnCoefficient			14

Package DBCVindex

Current CRAN status: OK: 14

Package geneExpressionFromGEO

Current CRAN status: ERROR: 2, NOTE: 2, OK: 11

Version: 0.9
Check: dependencies in R code
Result: NOTE Namespaces in Imports field not imported from: ‘BiocManager’ ‘R.utils’ ‘markdown’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.9
Check: examples
Result: ERROR Running examples in ‘geneExpressionFromGEO-Ex.R’ failed The error most likely occurred in: > ### Name: getGeneExpressionFromGEO > ### Title: Function that reads in the GEO code of a dataset, and returns > ### the gene expression dataframe. > ### Aliases: getGeneExpressionFromGEO > > ### ** Examples > > geneExpressionDF1 <- getGeneExpressionFromGEO("GSE3268", FALSE, FALSE) Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268 Setting options('download.file.method.GEOquery'='auto') Setting options('GEOquery.inmemory.gpl'=FALSE) Error in open.connection(x, "rb") : cannot open the connection Calls: getGeneExpressionFromGEO ... getAndParseGSEMatrices -> getDirListing -> <Anonymous> -> read_html.default Execution halted Flavor: r-devel-macos-arm64

Version: 0.9
Check: package dependencies
Result: ERROR Package required but not available: ‘GEOquery’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-oldrel-macos-arm64

Package SaturnCoefficient

Current CRAN status: OK: 14