CRAN Package Check Results for Maintainer ‘Dominik Rafacz <dominikrafacz at gmail.com>’

Last updated on 2024-12-22 13:49:09 CET.

Package	ERROR	NOTE	OK
deepdep			13
tidysq	8	4	1

Package deepdep

Current CRAN status: OK: 13

Package tidysq

Current CRAN status: ERROR: 8, NOTE: 4, OK: 1

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [14s/18s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [9s/11s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [23s/31s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ Running ‘testthat.R’ [20s/22s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.2.2
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [12s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-devel-windows-x86_64

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/0s] Running ‘testthat.R’ [14s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-patched-linux-x86_64

Version: 1.2.2
Check: tests
Result: ERROR Running ‘spelling.R’ [0s/1s] Running ‘testthat.R’ [13s/16s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-release-linux-x86_64

Version: 1.2.2
Check: installed package size
Result: NOTE installed size is 46.4Mb sub-directories of 1Mb or more: libs 45.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Version: 1.2.2
Check: tests
Result: ERROR Running 'spelling.R' [0s] Running 'testthat.R' [17s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(tidysq) Attaching package: 'tidysq' The following object is masked from 'package:base': paste > > test_check("tidysq") [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • warning handling on C++ side is poorly implemented (1): 'test-warnings.R:39:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-sq.R:48:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_atp, alphabet = atp_alph)) (`actual`) and `atp_alph` (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-sq.R:52:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt")) (`actual`) and obtain_alphabet(str_unt) (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:56:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "?")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "?") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-sq.R:60:3'): sq() returns object with alphabet attribute that contains existing letters for unt and atp options ── alphabet(sq(str_unt, alphabet = "unt", NA_letter = "(?)")) (`actual`) and obtain_alphabet(str_unt, NA_letter = "(?)") (`expected`) don't have the same values. * Only in `actual`: NA * Only in `expected`: NA ── Failure ('test-substitute_letters.R:23:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(substitute_letters(sq_dna, c(T = "B"))) (`actual`) and c("A", "C", "G", "B", "-") (`expected`) don't have the same values. * Only in `actual`: NA ── Failure ('test-substitute_letters.R:27:3'): substitute_letters() returns an object with trimmed alphabet attribute ── alphabet(...) (`actual`) and setdiff(...) (`expected`) don't have the same values. * Only in `actual`: NA [ FAIL 6 | WARN 0 | SKIP 1 | PASS 812 ] Error: Test failures Execution halted Flavor: r-oldrel-windows-x86_64