CRAN Package Check Results for Maintainer ‘Ghislain Thiery <ghislain.thiery at ntymail.com>’

Last updated on 2024-11-21 19:53:08 CET.

Package	ERROR	WARN	NOTE
doolkit	2	1	10

Package doolkit

Current CRAN status: ERROR: 2, WARN: 1, NOTE: 10

Version: 1.42.2
Check: whether package can be installed
Result: WARN Found the following significant warnings: Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'. Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.42.2
Check: Rd files
Result: NOTE checkRd: (-1) dkprofile.Rd:64: Lost braces 64 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)} | ^ checkRd: (-1) dne.Rd:45: Lost braces 45 | \doi{10.1002/ajpa.21489}{Bunn et al. (2011)} | ^ checkRd: (-1) dne.Rd:47: Lost braces 47 | \doi{10.1007/s10914-016-9326-0}{Pampush et al. (2016)} | ^ checkRd: (-1) inclin.Rd:28: Lost braces 28 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) oedist.Rd:43: Lost braces 43 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) oedist.Rd:45: Lost braces 45 | \doi{10.1371/journal.pone.0138802}{Guy et al. (2015)} | ^ checkRd: (-1) oedist.Rd:47: Lost braces 47 | \doi{10.3389/fphys.2017.00524}{Thiery et al. (2017)} | ^ checkRd: (-1) oedist.Rd:49: Lost braces 49 | \doi{10.1098/rsbl.2019.0671}{Schwartz et al. (2020)} | ^ checkRd: (-1) opc.Rd:36: Lost braces 36 | \doi{10.1038/nature05433}{Evans et al. (2007)} | ^ checkRd: (-1) opcr.Rd:30: Lost braces 30 | \doi{10.1038/nature10880}{Wilson et al. (2012)} | ^ checkRd: (-1) rfi.Rd:34: Lost braces 34 | \doi{10.1016/j.jhevol.2008.08.002}{Boyer (2008)} | ^ checkRd: (-1) rfi.Rd:35: Lost braces 35 | \doi{10.1371/journal.pone.0066142}{Guy et al. (2013)} | ^ checkRd: (-1) rrate.Rd:34: Lost braces 34 | \doi{10.1002/ajpa.23916}{Thiery et al. (2019)} | ^ checkRd: (-1) shape.index.Rd:44: Lost braces 44 | \doi{10.1029/TR013i001p00350}{Horton (1932)} | ^ checkRd: (-1) shape.index.Rd:46: Lost braces 46 | \doi{10.1130/0016-7606(1956)67[597:EODSAS]2.0.CO;2}{Schumm (1956)} | ^ checkRd: (-1) shape.index.Rd:48: Lost braces 48 | \doi{10.2475/ajs.255.2.138}{Chorley et al. (1957)} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Version: 1.42.2
Check: installed package size
Result: NOTE installed size is 6.5Mb sub-directories of 1Mb or more: R 2.1Mb data 2.0Mb extdata 2.3Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64

Version: 1.42.2
Check: examples
Result: ERROR Running examples in ‘doolkit-Ex.R’ failed The error most likely occurred in: > ### Name: dkborder > ### Title: dkborder > ### Aliases: dkborder > > ### ** Examples > > border <- dkborder(dkmodel$cusp) > > # Map the border in orange: > is_border <- rep(1, Rvcg::nfaces(dkmodel$cusp)) > is_border[border] <- 2 > dkmap(dkmodel$cusp, is_border, col = c("white", "#E69F00"), col.levels = 2, legend = FALSE, + scalebar = FALSE, smooth = FALSE) Warning in normalizePath(texture) : path[1]="/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpVZL5EK/file7ab930bbc064.png": No such file or directory Warning in rgl.material0(color = "white", alpha = 1, lit = FALSE, ambient = "#000000", : RGL: Pixmap load: unable to open file '/var/folders/k4/0jwzxmln0nb8y6rkzprptb640000gq/T//RtmpVZL5EK/file7ab930bbc064.png' for reading > > # Compare with vcgBorder from the R package Rvcg, in blue: > vcgborder <- which(Rvcg::vcgBorder(dkmodel$cusp)$borderit == TRUE) > is_border[vcgborder] <- 3 > dkmap(dkmodel$cusp, is_border, col = c("white", "#E69F00", "#56B4E9"), col.levels = 3, + legend = FALSE, scalebar = FALSE, smooth = FALSE) Flavor: r-release-macos-arm64

Version: 1.42.2
Check: examples
Result: ERROR Running examples in ‘doolkit-Ex.R’ failed The error most likely occurred in: > ### Name: dkcrop > ### Title: crop a mesh > ### Aliases: dkcrop > > ### ** Examples > > #Crop above a certain threshold: > mythreshold <- quantile(elev(dkmodel$basin), 0.5) > mypolynetwork <- poly.network(dkmodel$basin, elev(dkmodel$basin), + lwr.limit = mythreshold) > mynewmesh <- dkcrop(dkmodel$basin, mypolynetwork) > dkmap(mynewmesh, elev(mynewmesh)) Flavor: r-release-macos-x86_64