Last updated on 2024-12-22 13:49:12 CET.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| RCPA | 1 | 8 | 4 |
| scDHA | 1 | 3 | 9 |
Current CRAN status: ERROR: 1, NOTE: 8, OK: 4
Version: 0.2.5
Check: package dependencies
Result: ERROR
Package required but not available: ‘DESeq2’
Packages suggested but not available for checking:
'fgsea', 'pd.hg.u133.plus.2', 'oligo'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘fgsea’
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.5
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'hgu133plus2.db', 'pd.hg.u133.plus.2'
Flavor: r-release-macos-arm64
Version: 0.2.5
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘pd.hg.u133.plus.2’
Flavors: r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 0.2.5
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'ROntoTools', 'hgu133plus2.db', 'pd.hg.u133.plus.2', 'oligo'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Current CRAN status: ERROR: 1, NOTE: 3, OK: 9
Version: 1.2.2
Check: installed package size
Result: NOTE
installed size is 7.3Mb
sub-directories of 1Mb or more:
data 4.1Mb
libs 2.9Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 1.2.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/3s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(scDHA)
libtorch is not installed. Use `torch::install_torch()` to download and install libtorch
>
> on_cran <- function() !identical(Sys.getenv("NOT_CRAN"), "true")
>
> if((!torch::torch_is_installed()) &
+ (tolower(Sys.info()[["sysname"]]) != "windows") &
+ (!on_cran()))
+ {
+ torch::install_torch()
+ }
>
> Sys.setenv(IN_TEST_scDHA="true")
>
> test_check("scDHA")
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 3 ]
══ Skipped tests (2) ═══════════════════════════════════════════════════════════
• On CRAN (2): 'test-scDHA.R:3:3', 'test-scDHA.R:41:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-scDHA.R:21:3'): scDHA.vis can run ──────────────────────────────
Error in `irlba::irlba(L, nv = n, nu = 0, maxit = iters)`: function 'as_cholmod_sparse' not provided by package 'Matrix'
Backtrace:
▆
1. └─scDHA::scDHA.vis(result, ncores = 2, seed = 1) at test-scDHA.R:21:3
2. └─uwot::umap(data, n_threads = ncores)
3. └─uwot:::uwot(...)
4. └─uwot:::spectral_init(V, ndim = n_components, verbose = verbose)
5. └─uwot:::irlba_tsvd_normalized_laplacian_init(A, ndim, verbose = FALSE)
6. └─uwot:::irlba_spectral_tsvd(L, ndim + 1)
7. ├─base::suppressWarnings(...)
8. │ └─base::withCallingHandlers(...)
9. └─irlba::irlba(L, nv = n, nu = 0, maxit = iters)
[ FAIL 1 | WARN 0 | SKIP 2 | PASS 3 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-arm64
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They may not be fully stable and should be used with caution. We make no claims about them.