CRAN Package Check Results for Maintainer ‘Karolis Koncevičius <karolis.koncevicius at gmail.com>’

Last updated on 2025-02-16 08:51:32 CET.

Package	ERROR	WARN	OK
annmatrix		2	13
basetheme			15
matrixTests	1		14

Package annmatrix

Current CRAN status: WARN: 2, OK: 13

Version: 0.1.2
Check: Rd \usage sections
Result: WARN Bad \usage lines found in documentation object 'annmatrix': <unescaped bksl>method{@}{annmatrix}(object, name) <unescaped bksl>method{@}{annmatrix}(object, name) <- value Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64

Package basetheme

Current CRAN status: OK: 15

Package matrixTests

Current CRAN status: ERROR: 1, OK: 14

Version: 0.2.3
Check: tests
Result: ERROR Running ‘andersondarling_behaviour.r’ [0s/0s] Running ‘andersondarling_correctness.r’ [1s/1s] Running ‘andersondarling_errors.r’ [0s/0s] Running ‘andersondarling_warnings.r’ [0s/0s] Running ‘bartlett_behaviour.r’ [0s/0s] Running ‘bartlett_correctness.r’ [2s/4s] Running ‘bartlett_errors.r’ [0s/0s] Running ‘bartlett_warnings.r’ [0s/0s] Running ‘brownforsythe_behaviour.r’ [0s/0s] Running ‘brownforsythe_correctness.r’ [7s/13s] Running ‘brownforsythe_errors.r’ [0s/0s] Running ‘brownforsythe_warnings.r’ [0s/0s] Running ‘cor_pearson_behaviour.r’ [0s/0s] Running ‘cor_pearson_correctness.r’ [1s/1s] Running ‘cor_pearson_errors.r’ [0s/0s] Running ‘cor_pearson_warnings.r’ [0s/0s] Running ‘cosinor_behaviour.r’ [0s/0s] Running ‘cosinor_correctness.r’ [1s/2s] Running the tests in ‘tests/cosinor_correctness.r’ failed. Complete output: > library(matrixTests) > > #--- functions ----------------------------------------------------------------- > > cosinor_cosinor <- function(mat, time, per) { + stopifnot(ncol(mat) == length(time)) + if(is.vector(mat)) mat <- matrix(mat, nrow=1) + n <- m <- amp <- acr <- dfm <- dfr <- rsq <- f <- p <- numeric(nrow(mat)) + + for(i in 1:nrow(mat)) { + dat <- data.frame(x=mat[i,], t=time) + dat <- dat[!is.na(dat$x) & !is.na(dat$t),] + res <- cosinor::cosinor.lm(x ~ time(t), data=dat, period=per) + + n[i] <- nrow(dat) + m[i] <- res$coefficients[1] + amp[i] <- res$coefficients[2] + acr[i] <- abs(cosinor2::correct.acrophase(res) / pi * (per/2)) + dfm[i] <- cosinor2::cosinor.detect(res)[2] + dfr[i] <- cosinor2::cosinor.detect(res)[3] + rsq[i] <- cosinor2::cosinor.PR(res)[[2]] + f[i] <- cosinor2::cosinor.detect(res)[1] + p[i] <- cosinor2::cosinor.detect(res)[4] + } + + data.frame(obs=n, mesor=m, amplitude=amp, acrophase=acr, rsquared=rsq, + df.model=dfm, df.residual=dfr, statistic=f, + pvalue=p, period=per + ) + } > > > #--- montecarlo ---------------------------------------------------------------- > > # equally spaced 10 time points, period = 10 > X <- matrix(rnorm(10000), ncol=10) > t <- -5:4 > res1 <- cosinor_cosinor(X, t, 10) Error in loadNamespace(x) : there is no package called 'cosinor2' Calls: cosinor_cosinor ... loadNamespace -> withRestarts -> withOneRestart -> doWithOneRestart Execution halted Flavor: r-devel-macos-x86_64