CRAN Package Check Results for Maintainer ‘Leena Choi <leena.choi at vanderbilt.edu>’

Last updated on 2024-12-22 13:49:14 CET.

Package	NOTE	OK
EHR	10	3
medExtractR	10	3
PhysicalActivity	10	3

Package EHR

Current CRAN status: NOTE: 10, OK: 3

Version: 0.4-11
Check: Rd files
Result: NOTE checkRd: (-1) build_lastdose.Rd:10: Lost braces 10 | code{build_lastdose}: build PK oral with lastdose information | ^ checkRd: (-1) mod-internal.Rd:18: Lost braces 18 | code{colflow_mod}: build a comparison of potentially duplicate flow data | ^ checkRd: (-1) mod-internal.Rd:21: Lost braces 21 | code{findMedFlowRow_mod}: find row numbers for matching ID and time | ^ checkRd: (-1) mod-internal.Rd:23: Lost braces 23 | code{flowData_mod}: correct flow data | ^ checkRd: (-1) mod-internal.Rd:25: Lost braces 25 | code{concData_mod}: correct concentration data | ^ checkRd: (-1) mod-internal.Rd:27: Lost braces 27 | code{infusionData_mod}: combine flow and MAR data; standardize hourly rate, | ^ checkRd: (-1) mod-internal.Rd:30: Lost braces 30 | code{resolveDoseDups_mod}: correct duplicated infusion and bolus doses | ^ checkRd: (-1) mod-internal.Rd:32: Lost braces 32 | code{writeCheckData} | ^ checkRd: (-1) mod-internal.Rd:34: Lost braces 34 | code{processErx}: prepare e-prescription data | ^ checkRd: (-1) mod-internal.Rd:36: Lost braces 36 | code{processErxAddl}: additional processing, checking for connected observations | ^ checkRd: (-1) mod-internal.Rd:38: Lost braces 38 | code{validateColumns}: check columns are in place | ^ checkRd: (-1) mod-internal.Rd:40: Lost braces 40 | code{read}: generic read function | ^ checkRd: (-1) mod-internal.Rd:42: Lost braces 42 | code{setDoseMar}: set unit/rate/date columns | ^ checkRd: (-1) pk-internal.Rd:19: Lost braces 19 | code{takeClosest}: take value at nearest time | ^ checkRd: (-1) pk-internal.Rd:22: Lost braces 22 | code{takeClosestTime}: find nearest time | ^ checkRd: (-1) pk-internal.Rd:24: Lost braces 24 | code{daysDiff}: number of days between two dates | ^ checkRd: (-1) pk-internal.Rd:26: Lost braces 26 | code{minDiff}: difference (in minutes) of time vector | ^ checkRd: (-1) pk-internal.Rd:28: Lost braces 28 | code{fixDates}: add leading zeroes to date | ^ checkRd: (-1) pk-internal.Rd:30: Lost braces 30 | code{joinFlowMar}: rbind two data sets | ^ checkRd: (-1) pk-internal.Rd:32: Lost braces 32 | code{updateInterval_mod}: replace maxint with difference between surgery time | ^ checkRd: (-1) pk-internal.Rd:35: Lost braces 35 | code{fix_serum_time}: create time variable | ^ checkRd: (-1) pk-internal.Rd:37: Lost braces 37 | code{merge_by_time}: impute in x by closest time in y | ^ checkRd: (-1) pk-internal.Rd:39: Lost braces 39 | code{merge_inf_bolus}: combine infusion and bolus into one hourly dose file | ^ checkRd: (-1) pk-internal.Rd:41: Lost braces 41 | code{addZeroDose}: add rows of zero dose, after a gap | ^ checkRd: (-1) pk-internal.Rd:43: Lost braces 43 | code{pkdata} | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package medExtractR

Current CRAN status: NOTE: 10, OK: 3

Version: 0.4.1
Check: Rd files
Result: NOTE checkRd: (-1) strings-internal.Rd:14: Lost braces 14 | code{stringPlaceExact}: find location of string, using exact match | ^ checkRd: (-1) strings-internal.Rd:17: Lost braces 17 | code{stringPlaceFuzzy}: find location of string, using partial match | ^ checkRd: (-1) strings-internal.Rd:19: Lost braces 19 | code{stringPlace}: find location of string, generic | ^ checkRd: (-1) strings-internal.Rd:21: Lost braces 21 | code{checkFuzzy}: check for "close" string matches | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64

Package PhysicalActivity

Current CRAN status: NOTE: 10, OK: 3

Version: 0.2-4
Check: Rd files
Result: NOTE checkRd: (-1) pa-internal.Rd:11: Lost braces 11 | code{l2df}: convert list to data.frame | ^ checkRd: (-1) pa-internal.Rd:14: Lost braces 14 | code{convertTZ}: force a new timezone on datetime | ^ checkRd: (-1) pa-internal.Rd:16: Lost braces 16 | code{createTime}: create datetime variable | ^ checkRd: (-1) pa-internal.Rd:18: Lost braces 18 | code{addDayIndex}: create ID_day variable from timestamp | ^ Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64