Last updated on 2025-03-17 00:50:35 CET.
Package | ERROR | WARN | NOTE | OK |
---|---|---|---|---|
netgsa | 4 | 1 | 5 | 5 |
Current CRAN status: ERROR: 4, WARN: 1, NOTE: 5, OK: 5
Version: 4.0.5
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
netEst.dir.Rd: glmnet
netEst.undir.Rd: glmnet
netgsa-package.Rd: glmnet
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 4.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘netgsa.Rmd’ using rmarkdown
Quitting from lines 102-105 [pathways] (netgsa.Rmd)
Error: processing vignette 'netgsa.Rmd' failed with diagnostics:
cannot download pathway data: are you offline?
--- failed re-building ‘netgsa.Rmd’
SUMMARY: processing the following file failed:
‘netgsa.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-release-linux-x86_64
Version: 4.0.5
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘netgsa.Rmd’ using rmarkdown
Quitting from netgsa.Rmd:101-105 [pathways]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fetchRemote()`:
! cannot download pathway data: are you offline?
---
Backtrace:
▆
1. └─graphite::pathways("hsapiens", "kegg")
2. └─graphite:::loadData(paste(species, database, sep = "-"))
3. └─graphite:::fetchRemote(name, path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'netgsa.Rmd' failed with diagnostics:
cannot download pathway data: are you offline?
--- failed re-building ‘netgsa.Rmd’
SUMMARY: processing the following file failed:
‘netgsa.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 4.0.5
Check: package dependencies
Result: ERROR
Package required but not available: ‘org.Hs.eg.db’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-macos-arm64
Version: 4.0.5
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rd warning: netEst.dir.Rd:53: missing link ‘glmnet’
Rd warning: netEst.undir.Rd:56: missing link ‘glmnet’
Rd warning: netgsa-package.Rd:20: missing link ‘glmnet’
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/netgsa.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-14 (Debian 14.2.0-17) 14.2.0’
Flavor: r-patched-linux-x86_64
Version: 4.0.5
Check: installed package size
Result: NOTE
installed size is 21.2Mb
sub-directories of 1Mb or more:
doc 2.8Mb
libs 17.5Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.