CRAN Package Check Results for Maintainer ‘Michael Hellstern <mikeh1 at uw.edu>’

Last updated on 2025-03-17 00:50:35 CET.

Package	ERROR	WARN	NOTE	OK
netgsa	4	1	5	5

Package netgsa

Current CRAN status: ERROR: 4, WARN: 1, NOTE: 5, OK: 5

Version: 4.0.5
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: netEst.dir.Rd: glmnet netEst.undir.Rd: glmnet netgsa-package.Rd: glmnet Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Version: 4.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘netgsa.Rmd’ using rmarkdown Quitting from lines 102-105 [pathways] (netgsa.Rmd) Error: processing vignette 'netgsa.Rmd' failed with diagnostics: cannot download pathway data: are you offline? --- failed re-building ‘netgsa.Rmd’ SUMMARY: processing the following file failed: ‘netgsa.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-release-linux-x86_64

Version: 4.0.5
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘netgsa.Rmd’ using rmarkdown Quitting from netgsa.Rmd:101-105 [pathways] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `fetchRemote()`: ! cannot download pathway data: are you offline? --- Backtrace: ▆ 1. └─graphite::pathways("hsapiens", "kegg") 2. └─graphite:::loadData(paste(species, database, sep = "-")) 3. └─graphite:::fetchRemote(name, path) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'netgsa.Rmd' failed with diagnostics: cannot download pathway data: are you offline? --- failed re-building ‘netgsa.Rmd’ SUMMARY: processing the following file failed: ‘netgsa.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 4.0.5
Check: package dependencies
Result: ERROR Package required but not available: ‘org.Hs.eg.db’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-macos-arm64

Version: 4.0.5
Check: whether package can be installed
Result: WARN Found the following significant warnings: Rd warning: netEst.dir.Rd:53: missing link ‘glmnet’ Rd warning: netEst.undir.Rd:56: missing link ‘glmnet’ Rd warning: netgsa-package.Rd:20: missing link ‘glmnet’ See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/netgsa.Rcheck/00install.out’ for details. * used C++ compiler: ‘g++-14 (Debian 14.2.0-17) 14.2.0’ Flavor: r-patched-linux-x86_64

Version: 4.0.5
Check: installed package size
Result: NOTE installed size is 21.2Mb sub-directories of 1Mb or more: doc 2.8Mb libs 17.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64