CRAN Package Check Results for Maintainer ‘Aidan Morales <moral169 at msu.edu>’

Last updated on 2024-11-21 19:53:14 CET.

Package	ERROR	NOTE	OK
rTwig	1	4	8

Package rTwig

Current CRAN status: ERROR: 1, NOTE: 4, OK: 8

Version: 1.2.0
Check: examples
Result: ERROR Running examples in ‘rTwig-Ex.R’ failed The error most likely occurred in: > ### Name: correct_radii > ### Title: Correct Radii > ### Aliases: correct_radii > > ### ** Examples > > > ## TreeQSM Processing Chain > file <- system.file("extdata/QSM.mat", package = "rTwig") > qsm <- import_qsm(file) Importing TreeQSM > cylinder <- qsm$cylinder > cylinder <- update_cylinders(cylinder) Updating Cylinder Ordering Calculating Total Children Building Cylinder Network Caching Network Verifying Topology Calculating Growth Length Calculating Reverse Branch Order Calculating Branch Segments Calculating Alternate Branch Numbers Calculating Path Metrics > cylinder <- correct_radii(cylinder, twig_radius = 4.23) Generating Paths Filtering Paths Modeling Paths Updating Radii > str(cylinder) Classes ‘tidytable’, ‘tbl’, ‘data.table’ and 'data.frame': 1136 obs. of 33 variables: $ length : num 0.09392 0.07216 0.06654 0.00938 0.06795 ... $ start.x : num 0.768 0.768 0.768 0.769 0.769 ... $ start.y : num -16.4 -16.4 -16.4 -16.3 -16.3 ... $ start.z : num 254 254 254 254 254 ... $ axis.x : num 0.00995 -0.0111 0.01364 0.01571 0.01449 ... $ axis.y : num 0.0912 0.0391 0.0367 0.0271 0.0267 ... $ axis.z : num 0.996 0.999 0.999 1 1 ... $ end.x : num 0.769 0.768 0.769 0.769 0.77 ... $ end.y : num -16.4 -16.4 -16.3 -16.3 -16.3 ... $ end.z : num 254 254 254 254 254 ... $ added : num 0 0 0 0 0 0 0 0 0 0 ... $ BranchOrder : int 0 0 0 0 0 0 0 0 0 0 ... $ reverseBranchOrder : num 20 20 20 20 20 20 20 20 20 20 ... $ PositionInBranch : int 1 2 3 4 5 6 7 8 9 10 ... $ segment : int 1 1 1 1 1 1 1 1 1 1 ... $ parentSegment : int 0 0 0 0 0 0 0 0 0 0 ... $ mad : num 0.00072 0.000538 0.000523 0.000335 0.000438 ... $ SurfCov : num 0.875 1 1 1 1 1 1 1 1 1 ... $ UnmodRadius : num 0.0465 0.0454 0.0442 0.0437 0.0429 ... $ OldRadius : num 0.0465 0.0454 0.0442 0.0437 0.0429 ... $ growthLength : num 32.8 32.7 32.6 32.6 32.6 ... $ branch : int 1 1 1 1 1 1 1 1 1 1 ... $ branch_alt : int 0 0 0 0 0 0 0 0 0 0 ... $ parent : num 0 1 2 3 4 5 6 7 8 9 ... $ extension : int 1 2 3 4 5 6 7 8 9 10 ... $ totalChildren : int 1 1 1 1 1 1 1 1 1 1 ... $ distanceFromBase : num 0.0939 0.1661 0.2326 0.242 0.31 ... $ distanceToTwig : num 3.4 3.31 3.24 3.17 3.16 ... $ reversePipeAreaBranchorder : int 82 82 82 82 82 82 82 82 82 82 ... $ reversePipeRadiusBranchorder: num 9.06 9.06 9.06 9.06 9.06 ... $ vesselVolume : num 279 271 266 260 259 ... $ radius : num 0.0465 0.0454 0.0442 0.0437 0.0429 ... $ modified : num 0 0 0 0 0 0 0 0 0 0 ... - attr(*, ".internal.selfref")=<externalptr> > > ## SimpleForest Processing Chain > file <- system.file("extdata/QSM.csv", package = "rTwig") > cylinder <- read.csv(file) > cylinder <- update_cylinders(cylinder) Finding Branches Calculating Total Children Building Cylinder Network Caching Network Verifying Topology Calculating Path Metrics > cylinder <- correct_radii(cylinder, twig_radius = 4.23) Generating Paths Filtering Paths Modeling Paths Error in x %*% coefficients : NA/NaN/Inf in foreign function call (arg 2) Calls: correct_radii ... summarize.tidytable -> eval_tidy -> [ -> [.data.table -> path_gam Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.2.0
Check: installed package size
Result: NOTE installed size is 6.6Mb sub-directories of 1Mb or more: extdata 1.0Mb libs 4.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64