Last updated on 2025-03-14 06:53:02 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.5.4 | 7.96 | 77.60 | 85.56 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.5.4 | 4.36 | 56.20 | 60.56 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.5.4 | 140.78 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.5.4 | 190.32 | ERROR | |||
| r-devel-macos-arm64 | 0.5.4 | 63.00 | OK | |||
| r-devel-macos-x86_64 | 0.5.4 | 99.00 | OK | |||
| r-devel-windows-x86_64 | 0.5.4 | 12.00 | 107.00 | 119.00 | ERROR | |
| r-patched-linux-x86_64 | 0.5.4 | ERROR | ||||
| r-release-linux-x86_64 | 0.5.4 | 8.06 | 74.71 | 82.77 | ERROR | |
| r-release-macos-arm64 | 0.5.4 | 57.00 | OK | |||
| r-release-macos-x86_64 | 0.5.4 | 99.00 | OK | |||
| r-release-windows-x86_64 | 0.5.4 | 11.00 | 105.00 | 116.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.5.4 | OK | ||||
| r-oldrel-macos-x86_64 | 0.5.4 | 100.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.5.4 | 12.00 | 119.00 | 131.00 | ERROR |
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rmzqc)
>
> test_check("rmzqc")
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7347 bytes
==================================================
downloaded 7347 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7347 bytes
==================================================
downloaded 7347 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", :
Download failed.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7347 bytes
==================================================
downloaded 7347 bytes
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rmzqc)
>
> test_check("rmzqc")
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", :
Download failed.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [25s/35s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rmzqc)
>
> test_check("rmzqc")
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", :
Download failed.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
[ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
[ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [26s/83s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rmzqc)
>
> test_check("rmzqc")
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", :
Download failed.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
[ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
[ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.5.4
Check: tests
Result: ERROR
Running 'testthat.R' [12s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(rmzqc)
>
> test_check("rmzqc")
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Error in download.file("https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest", :
cannot open URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Error in download.file("https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest", :
cannot open URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", :
Download failed.
Error in url("https://api.github.com", open = "r") :
cannot open the connection to 'https://api.github.com'
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
[ FAIL 2 | WARN 19 | SKIP 1 | PASS 86 ]
══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test_obo.R:22:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
[ FAIL 2 | WARN 19 | SKIP 1 | PASS 86 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.5.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [15s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(rmzqc)
>
> test_check("rmzqc")
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", :
Download failed.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
Error: Test failures
Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.5.4
Check: tests
Result: ERROR
Running 'testthat.R' [14s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(rmzqc)
>
> test_check("rmzqc")
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", :
Download failed.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7348 bytes
==================================================
downloaded 7348 bytes
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
[ FAIL 2 | WARN 14 | SKIP 0 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.5.4
Check: tests
Result: ERROR
Running 'testthat.R' [18s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(rmzqc)
>
> test_check("rmzqc")
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7347 bytes
==================================================
downloaded 7347 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7347 bytes
==================================================
downloaded 7347 bytes
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/releases/download/v4.1.192/psi-ms.obo'
Content type 'application/octet-stream' length 1009882 bytes (986 KB)
==================================================
downloaded 986 KB
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Downloading obo from 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo' ...
trying URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in download.file(custom_uri, tmp_filename) :
cannot open URL 'https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo'
Error in getCVDictionary(source = "custom", custom_uri = "https://github.com/HUPO-PSI/psi-ms-CV/rele_BROKEN_URL_ases/download/v4.1.147/psi-ms.obo", :
Download failed.
trying URL 'https://api.github.com/repos/HUPO-PSI/psi-ms-CV/releases/latest'
Content type 'application/json; charset=utf-8' length 7347 bytes
==================================================
downloaded 7347 bytes
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
Superclass Singleton has cloneable=FALSE, but subclass CV_ has cloneable=TRUE. A subclass cannot be cloneable when its superclass is not cloneable, so cloning will be disabled for CV_.
[ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_conversion.R:17:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = 13405)` produced messages.
── Failure ('test_conversion.R:18:3'): toQCMetric = function(id, value, on_violation = c("error", "warn")) ──
`toQCMetric(id = "MS:4000059", value = "13405")` produced messages.
[ FAIL 2 | WARN 16 | SKIP 0 | PASS 87 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-x86_64
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.