CRAN Package Check Results for Maintainer ‘Robin Denz <robin.denz at rub.de>’

Last updated on 2025-04-10 08:59:09 CEST.

Package	ERROR	NOTE	OK
adjustedCurves			14
CareDensity			14
contsurvplot		4	10
simDAG	1		14

Package adjustedCurves

Current CRAN status: OK: 14

Package CareDensity

Current CRAN status: OK: 14

Package contsurvplot

Current CRAN status: NOTE: 4, OK: 10

Version: 0.2.1
Check: Rd cross-references
Result: NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors: curve_cont.Rd: riskRegression plot_surv_3Dsurface.Rd: riskRegression plot_surv_animated.Rd: riskRegression, facet_wrap plot_surv_area.Rd: riskRegression, facet_wrap plot_surv_at_t.Rd: riskRegression, facet_wrap plot_surv_contour.Rd: riskRegression, ggplot2, facet_wrap plot_surv_heatmap.Rd: riskRegression, facet_wrap plot_surv_lines.Rd: riskRegression, facet_wrap plot_surv_matrix.Rd: riskRegression, facet_wrap plot_surv_quantiles.Rd: riskRegression, facet_wrap plot_surv_rmst.Rd: riskRegression, facet_wrap plot_surv_rmtl.Rd: riskRegression, facet_wrap Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64

Package simDAG

Current CRAN status: ERROR: 1, OK: 14

Version: 0.3.0
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘v_cookbook.Rmd’ using rmarkdown Quitting from v_cookbook.Rmd:224-237 [unnamed-chunk-11] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! An error occured when processing node 'Y'. The message was: Error: An error occured when processing node '.'. The message was: Error in rowSums(mapply("*", data, betas)): 'x' must be an array of at least two dimensions --- Backtrace: ▆ 1. └─simDAG::sim_from_dag(dag, n_sim = 10) 2. └─base::tryCatch(...) 3. └─base (local) tryCatchList(expr, classes, parentenv, handlers) 4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]]) 5. └─value[[3L]](cond) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'v_cookbook.Rmd' failed with diagnostics: An error occured when processing node 'Y'. The message was: Error: An error occured when processing node '.'. The message was: Error in rowSums(mapply("*", data, betas)): 'x' must be an array of at least two dimensions --- failed re-building ‘v_cookbook.Rmd’ --- re-building ‘v_covid_example.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simDAG.Rcheck/vign_test/simDAG/vignettes/v_covid_example_files/figure-html/unnamed-chunk-9-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 27684 bytes Input file size = 27798 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22302 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 22064 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 22064 Output IDAT size = 22064 bytes (5620 bytes decrease) Output file size = 22142 bytes (5656 bytes = 20.35% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simDAG.Rcheck/vign_test/simDAG/vignettes/v_covid_example_files/figure-html/unnamed-chunk-11-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30835 bytes Input file size = 30949 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24521 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 24521 Output IDAT size = 24521 bytes (6314 bytes decrease) Output file size = 24599 bytes (6350 bytes = 20.52% decrease) --- finished re-building ‘v_covid_example.Rmd’ --- re-building ‘v_sim_discrete_time.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simDAG.Rcheck/vign_test/simDAG/vignettes/v_sim_discrete_time_files/figure-html/unnamed-chunk-8-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 25420 bytes Input file size = 25534 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19700 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19700 Output IDAT size = 19700 bytes (5720 bytes decrease) Output file size = 19778 bytes (5756 bytes = 22.54% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simDAG.Rcheck/vign_test/simDAG/vignettes/v_sim_discrete_time_files/figure-html/unnamed-chunk-11-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28845 bytes Input file size = 28959 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22526 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 22526 Output IDAT size = 22526 bytes (6319 bytes decrease) Output file size = 22604 bytes (6355 bytes = 21.94% decrease) --- finished re-building ‘v_sim_discrete_time.Rmd’ --- re-building ‘v_sim_from_dag.Rmd’ using rmarkdown ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simDAG.Rcheck/vign_test/simDAG/vignettes/v_sim_from_dag_files/figure-html/unnamed-chunk-6-1.png 576x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 23643 bytes Input file size = 23745 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 19000 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 18884 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 18884 Output IDAT size = 18884 bytes (4759 bytes decrease) Output file size = 18962 bytes (4783 bytes = 20.14% decrease) ** Processing: /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/simDAG.Rcheck/vign_test/simDAG/vignettes/v_sim_from_dag_files/figure-html/unnamed-chunk-10-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8086 bytes Input file size = 8944 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 7015 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7005 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 7005 Output IDAT size = 7005 bytes (1081 bytes decrease) Output file size = 7083 bytes (1861 bytes = 20.81% decrease) --- finished re-building ‘v_sim_from_dag.Rmd’ --- re-building ‘v_using_formulas.Rmd’ using rmarkdown --- finished re-building ‘v_using_formulas.Rmd’ SUMMARY: processing the following file failed: ‘v_cookbook.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-patched-linux-x86_64