Last updated on 2025-09-04 09:51:37 CEST.
| Package | ERROR | NOTE | OK |
|---|---|---|---|
| freesurferformats | 13 | ||
| fsbrain | 4 | 4 | 5 |
| pkgfilecache | 2 | 11 | |
| wal | 13 |
Current CRAN status: OK: 13
Current CRAN status: ERROR: 4, NOTE: 4, OK: 5
Version: 0.5.5
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
brainview.sd.Rd: bg3d, par3d
brainview.si.Rd: bg3d, par3d
brainview.sr.Rd: bg3d, spin3d, par3d
brainview.t4.Rd: bg3d, par3d
brainview.t9.Rd: bg3d, par3d
brainviews.Rd: par3d
collayer.from.mask.data.Rd: makecmap
collayer.from.morphlike.data.Rd: makecmap
coloredmesh.from.annot.Rd: tmesh3d
coloredmesh.from.color.Rd: tmesh3d
coloredmesh.from.label.Rd: makecmap, tmesh3d
coloredmesh.from.mask.Rd: makecmap, tmesh3d
coloredmesh.from.morph.native.Rd: makecmap, tmesh3d
coloredmesh.from.morph.standard.Rd: makecmap, tmesh3d
coloredmesh.from.morphdata.Rd: makecmap, tmesh3d
coloredmesh.from.preloaded.data.Rd: makecmap
coloredmeshes.from.color.Rd: tmesh3d
common.makecmap.range.Rd: makecmap
cube3D.tris.Rd: triangles3d
draw.colorbar.Rd: bgplot3d
fs.coloredmesh.Rd: tmesh3d
get.rglstyle.Rd: material3d, shade3d
get.rglstyle.default.Rd: material3d, shade3d
get.rglstyle.edges.Rd: shade3d
get.rglstyle.glass.Rd: material3d, shade3d
get.rglstyle.glass2.Rd: material3d, shade3d
get.rglstyle.parameters.Rd: material3d
get.rglstyle.semitransparent.Rd: material3d, shade3d
get.rglstyle.shiny.Rd: material3d, shade3d
highlight.vertices.on.subject.Rd: par3d
rglactions.Rd: text3d
rglvoxels.Rd: spheres3d, triangles3d
vis.color.on.subject.Rd: par3d
vis.coloredmeshes.Rd: par3d
vis.coloredmeshes.rotating.Rd: spin3d, par3d
vis.data.on.fsaverage.Rd: par3d, makecmap
vis.data.on.subject.Rd: par3d, makecmap
vis.fs.surface.Rd: makecmap
vis.labeldata.on.subject.Rd: par3d, makecmap
vis.mask.on.subject.Rd: par3d, makecmap
vis.region.values.on.subject.Rd: par3d, makecmap
vis.rotated.coloredmeshes.Rd: rotate3d
vis.subject.annot.Rd: par3d
vis.subject.label.Rd: par3d, makecmap
vis.subject.morph.native.Rd: par3d, makecmap
vis.subject.morph.standard.Rd: par3d, makecmap
vis.subject.pre.Rd: par3d, makecmap
vis.symmetric.data.on.subject.Rd: par3d, makecmap
vislayout.from.coloredmeshes.Rd: par3d, material3d
volvis.voxels.Rd: triangles3d
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-x86_64
Version: 0.5.5
Check: tests
Result: ERROR
Running ‘testthat_au.R’ [18s/50s]
Running ‘testthat_vz.R’ [6s/13s]
Running the tests in ‘tests/testthat_au.R’ failed.
Complete output:
> library(testthat)
> library(fsbrain)
>
> # Break up tests to allow tests to run longer than 10 min in travis,
> # see https://github.com/travis-ci/travis-ci/issues/3849#issuecomment-345686242.
> test_check("fsbrain", filter = "^[a-u]")
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/lh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1197156 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/lh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1195465 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/lh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6293309 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/rh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1229868 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/rh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1228177 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/rh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6336335 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/mri/brain.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz'
Content type 'application/vnd.proteus.magazine' length 1441225 bytes (1.4 MB)
==================================================
downloaded 1.4 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/mri/aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 363262 bytes (354 KB)
==================================================
downloaded 354 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/mri/aparc+aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aparc+aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aparc+aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 426342 bytes (416 KB)
==================================================
downloaded 416 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/vol_midbrain.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/vol_midbrain.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/vol_midbrain.label'
Content type 'text/html; charset=iso-8859-1' length 260601 bytes (254 KB)
==================================================
downloaded 254 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.curv'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.curv'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.inflated'
Content type 'audio/mpeg' length 5374968 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.inflated'
Content type 'audio/mpeg' length 5522172 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.volume'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.volume'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.jacobian_white'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.jacobian_white'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/mri/T1.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/T1.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/T1.mgz'
Content type 'application/vnd.proteus.magazine' length 5352743 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/lh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1197156 bytes (1.1 MB)
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downloaded 1.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/lh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1195465 bytes (1.1 MB)
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downloaded 1.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/lh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6293309 bytes (6.0 MB)
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downloaded 6.0 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/rh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1229868 bytes (1.2 MB)
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downloaded 1.2 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/rh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1228177 bytes (1.2 MB)
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downloaded 1.2 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/rh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6336335 bytes (6.0 MB)
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downloaded 6.0 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/mri/brain.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/brain.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/brain.mgz'
Content type 'application/vnd.proteus.magazine' length 1441225 bytes (1.4 MB)
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downloaded 1.4 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
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downloaded 5.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
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downloaded 5.3 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
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downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
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downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
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downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
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downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/mri/aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 363262 bytes (354 KB)
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downloaded 354 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/mri/aparc+aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/aparc+aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/aparc+aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 426342 bytes (416 KB)
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downloaded 416 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/vol_midbrain.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/vol_midbrain.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/vol_midbrain.label'
Content type 'text/html; charset=iso-8859-1' length 260601 bytes (254 KB)
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downloaded 254 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.curv'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.curv'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
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downloaded 5.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
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downloaded 5.3 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.inflated'
Content type 'audio/mpeg' length 5374968 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.inflated'
Content type 'audio/mpeg' length 5522172 bytes (5.3 MB)
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downloaded 5.3 MB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.volume'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.volume'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.jacobian_white'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
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downloaded 582 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.jacobian_white'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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downloaded 598 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
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downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
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downloaded 652 KB
Download file to '/home/hornik/tmp/scratch/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/mri/T1.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/T1.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/T1.mgz'
Content type 'application/vnd.proteus.magazine' length 5352743 bytes (5.1 MB)
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downloaded 5.1 MB
===Demographics report for 6 subjects follows=== * Demographics report for the 1 numeric columns: column min mean max num_NA age 28.000000 32.000000 35.000000 0 * Demographics report for the 2 factor columns: column num_levels num_NA subject_id 6 0 group 2 0 ===End of Demographics Report======Demographics report for 6 subjects follows=== * Demographics report for the 1 numeric columns: column min mean max num_NA age 28.000000 32.000000 35.000000 0 * Demographics report for the 2 factor columns: column num_levels num_NA subject_id 6 0 group 2 0 *Demographics report notice: the numeric data will be scaled and centered, and the report above represents the data BEFORE that operation.
===End of Demographics Report===[ FAIL 1 | WARN 0 | SKIP 91 | PASS 139 ]
══ Skipped tests (91) ══════════════════════════════════════════════════════════
• On CRAN (90): 'test-atlas.R:2:5', 'test-atlas.R:33:5', 'test-atlas.R:48:5',
'test-brain_igraph.R:6:9', 'test-brainview_magic.R:3:5',
'test-coloredmesh.R:4:5', 'test-coloredmesh.R:18:5',
'test-coloredmesh.R:33:5', 'test-coloredmesh.R:52:5',
'test-coloredmesh.R:70:5', 'test-curvature.R:4:5', 'test-curvature.R:32:5',
'test-export.R:3:5', 'test-fsdir_abstraction_group.R:2:5',
'test-fsdir_abstraction_group.R:31:5', 'test-fsdir_abstraction_group.R:62:5',
'test-fsdir_abstraction_group.R:87:5',
'test-fsdir_abstraction_group.R:108:5',
'test-fsdir_abstraction_subject.R:2:5',
'test-fsdir_abstraction_subject.R:18:5',
'test-fsdir_abstraction_subject.R:35:5',
'test-fsdir_abstraction_subject.R:54:5',
'test-fsdir_abstraction_subject.R:69:5',
'test-fsdir_abstraction_subject.R:85:5',
'test-fsdir_abstraction_subject.R:103:5',
'test-fsdir_abstraction_subject.R:160:5',
'test-fsdir_abstraction_subject.R:191:5',
'test-fsdir_abstraction_subject.R:215:5',
'test-fsdir_abstraction_subject.R:231:5', 'test-geodesic.R:3:5',
'test-geodesic.R:22:5', 'test-geodesic.R:44:5', 'test-geodesic.R:66:5',
'test-highlight.R:4:5', 'test-highlight.R:28:5', 'test-highlight.R:55:5',
'test-highlight.R:77:5', 'test-highlight.R:93:5', 'test-highlight.R:122:5',
'test-highlight.R:135:5', 'test-highlight.R:162:5', 'test-highlight.R:193:5',
'test-highlight.R:209:5', 'test-issue50.R:3:5', 'test-issue50.R:26:5',
'test-mesh_helpers.R:2:5', 'test-mesh_helpers.R:28:5',
'test-mesh_helpers.R:65:5', 'test-morph_agg.R:4:3', 'test-morph_agg.R:26:3',
'test-morph_agg.R:48:3', 'test-morph_agg.R:70:3', 'test-morph_agg.R:93:3',
'test-morph_agg.R:117:3', 'test-morph_agg.R:141:3', 'test-morph_agg.R:164:3',
'test-morph_agg.R:187:3', 'test-morph_atlas_agg.R:60:5',
'test-morph_atlas_agg.R:123:5', 'test-morph_atlas_agg.R:168:5',
'test-morph_atlas_agg.R:192:5', 'test-morph_atlas_agg.R:221:3',
'test-morph_atlas_agg.R:246:3', 'test-morph_atlas_agg.R:326:5',
'test-morph_atlas_agg.R:348:5', 'test-morph_concat.R:2:5',
'test-morph_concat.R:21:5', 'test-morph_concat.R:42:5',
'test-morph_concat.R:59:5', 'test-r_vis_volume.R:2:5',
'test-r_vis_volume.R:36:5', 'test-r_vis_volume.R:124:5',
'test-r_vis_volume.R:157:5', 'test-r_vis_volume.R:212:5',
'test-rglactions.R:3:5', 'test-rglactions.R:16:5', 'test-seg_stats.R:4:5',
'test-seg_stats.R:20:5', 'test-smooth.R:3:5', 'test-smooth.R:36:5',
'test-u_vis_volume_3d.R:4:5', 'test-u_vis_volume_3d.R:43:5',
'test-u_vis_volume_3d.R:56:5', 'test-u_vis_volume_3d.R:64:5',
'test-u_vis_volume_3d.R:74:5', 'test-u_vis_volume_3d.R:83:5',
'test-u_vis_volume_3d.R:125:5', 'test-u_vis_volume_3d.R:169:5',
'test-u_vis_volume_3d.R:190:5', 'test-u_vis_volume_3d.R:209:5'
• This test is broken (1): 'test-smooth.R:68:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-metadata_io.R:29:3'): Demographics reports can be generated. ──
`report_unpaired <- report.on.demographics(demographics, group_column_name = "group")` did not produce any warnings.
[ FAIL 1 | WARN 0 | SKIP 91 | PASS 139 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.5.5
Check: tests
Result: ERROR
Running ‘testthat_au.R’ [9s/38s]
Running ‘testthat_vz.R’ [5s/10s]
Running the tests in ‘tests/testthat_au.R’ failed.
Complete output:
> library(testthat)
> library(fsbrain)
>
> # Break up tests to allow tests to run longer than 10 min in travis,
> # see https://github.com/travis-ci/travis-ci/issues/3849#issuecomment-345686242.
> test_check("fsbrain", filter = "^[a-u]")
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/lh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1197156 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/lh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1195465 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/lh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6293309 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/rh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1229868 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/rh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1228177 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/rh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6336335 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/mri/brain.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz'
Content type 'application/vnd.proteus.magazine' length 1441225 bytes (1.4 MB)
==================================================
downloaded 1.4 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/mri/aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 363262 bytes (354 KB)
==================================================
downloaded 354 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/mri/aparc+aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aparc+aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aparc+aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 426342 bytes (416 KB)
==================================================
downloaded 416 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/label/vol_midbrain.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/vol_midbrain.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/vol_midbrain.label'
Content type 'text/html; charset=iso-8859-1' length 260601 bytes (254 KB)
==================================================
downloaded 254 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.curv'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.curv'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.inflated'
Content type 'audio/mpeg' length 5374968 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.inflated'
Content type 'audio/mpeg' length 5522172 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.pial.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.pial.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.volume'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.volume'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.jacobian_white'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.jacobian_white'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/rh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/mri/T1.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/T1.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/T1.mgz'
Content type 'application/vnd.proteus.magazine' length 5352743 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/lh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1197156 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/lh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1195465 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/lh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6293309 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/rh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1229868 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/rh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1228177 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/rh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6336335 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/mri/brain.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/brain.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/brain.mgz'
Content type 'application/vnd.proteus.magazine' length 1441225 bytes (1.4 MB)
==================================================
downloaded 1.4 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
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downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/mri/aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 363262 bytes (354 KB)
==================================================
downloaded 354 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/mri/aparc+aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/aparc+aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/aparc+aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 426342 bytes (416 KB)
==================================================
downloaded 416 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/label/vol_midbrain.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/vol_midbrain.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/vol_midbrain.label'
Content type 'text/html; charset=iso-8859-1' length 260601 bytes (254 KB)
==================================================
downloaded 254 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.curv'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.curv'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.inflated'
Content type 'audio/mpeg' length 5374968 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.inflated'
Content type 'audio/mpeg' length 5522172 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject1/surf/lh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.volume'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.volume'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.jacobian_white'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.jacobian_white'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/tmp/check-CRAN-regular-hornik/data/fsbrain/subjects_dir/subject2/mri/T1.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/T1.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/T1.mgz'
Content type 'application/vnd.proteus.magazine' length 5352743 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
===Demographics report for 6 subjects follows=== * Demographics report for the 1 numeric columns: column min mean max num_NA age 28.000000 32.000000 35.000000 0 * Demographics report for the 2 factor columns: column num_levels num_NA subject_id 6 0 group 2 0 ===End of Demographics Report======Demographics report for 6 subjects follows=== * Demographics report for the 1 numeric columns: column min mean max num_NA age 28.000000 32.000000 35.000000 0 * Demographics report for the 2 factor columns: column num_levels num_NA subject_id 6 0 group 2 0 *Demographics report notice: the numeric data will be scaled and centered, and the report above represents the data BEFORE that operation.
===End of Demographics Report===[ FAIL 1 | WARN 0 | SKIP 91 | PASS 139 ]
══ Skipped tests (91) ══════════════════════════════════════════════════════════
• On CRAN (90): 'test-atlas.R:2:5', 'test-atlas.R:33:5', 'test-atlas.R:48:5',
'test-brain_igraph.R:6:9', 'test-brainview_magic.R:3:5',
'test-coloredmesh.R:4:5', 'test-coloredmesh.R:18:5',
'test-coloredmesh.R:33:5', 'test-coloredmesh.R:52:5',
'test-coloredmesh.R:70:5', 'test-curvature.R:4:5', 'test-curvature.R:32:5',
'test-export.R:3:5', 'test-fsdir_abstraction_group.R:2:5',
'test-fsdir_abstraction_group.R:31:5', 'test-fsdir_abstraction_group.R:62:5',
'test-fsdir_abstraction_group.R:87:5',
'test-fsdir_abstraction_group.R:108:5',
'test-fsdir_abstraction_subject.R:2:5',
'test-fsdir_abstraction_subject.R:18:5',
'test-fsdir_abstraction_subject.R:35:5',
'test-fsdir_abstraction_subject.R:54:5',
'test-fsdir_abstraction_subject.R:69:5',
'test-fsdir_abstraction_subject.R:85:5',
'test-fsdir_abstraction_subject.R:103:5',
'test-fsdir_abstraction_subject.R:160:5',
'test-fsdir_abstraction_subject.R:191:5',
'test-fsdir_abstraction_subject.R:215:5',
'test-fsdir_abstraction_subject.R:231:5', 'test-geodesic.R:3:5',
'test-geodesic.R:22:5', 'test-geodesic.R:44:5', 'test-geodesic.R:66:5',
'test-highlight.R:4:5', 'test-highlight.R:28:5', 'test-highlight.R:55:5',
'test-highlight.R:77:5', 'test-highlight.R:93:5', 'test-highlight.R:122:5',
'test-highlight.R:135:5', 'test-highlight.R:162:5', 'test-highlight.R:193:5',
'test-highlight.R:209:5', 'test-issue50.R:3:5', 'test-issue50.R:26:5',
'test-mesh_helpers.R:2:5', 'test-mesh_helpers.R:28:5',
'test-mesh_helpers.R:65:5', 'test-morph_agg.R:4:3', 'test-morph_agg.R:26:3',
'test-morph_agg.R:48:3', 'test-morph_agg.R:70:3', 'test-morph_agg.R:93:3',
'test-morph_agg.R:117:3', 'test-morph_agg.R:141:3', 'test-morph_agg.R:164:3',
'test-morph_agg.R:187:3', 'test-morph_atlas_agg.R:60:5',
'test-morph_atlas_agg.R:123:5', 'test-morph_atlas_agg.R:168:5',
'test-morph_atlas_agg.R:192:5', 'test-morph_atlas_agg.R:221:3',
'test-morph_atlas_agg.R:246:3', 'test-morph_atlas_agg.R:326:5',
'test-morph_atlas_agg.R:348:5', 'test-morph_concat.R:2:5',
'test-morph_concat.R:21:5', 'test-morph_concat.R:42:5',
'test-morph_concat.R:59:5', 'test-r_vis_volume.R:2:5',
'test-r_vis_volume.R:36:5', 'test-r_vis_volume.R:124:5',
'test-r_vis_volume.R:157:5', 'test-r_vis_volume.R:212:5',
'test-rglactions.R:3:5', 'test-rglactions.R:16:5', 'test-seg_stats.R:4:5',
'test-seg_stats.R:20:5', 'test-smooth.R:3:5', 'test-smooth.R:36:5',
'test-u_vis_volume_3d.R:4:5', 'test-u_vis_volume_3d.R:43:5',
'test-u_vis_volume_3d.R:56:5', 'test-u_vis_volume_3d.R:64:5',
'test-u_vis_volume_3d.R:74:5', 'test-u_vis_volume_3d.R:83:5',
'test-u_vis_volume_3d.R:125:5', 'test-u_vis_volume_3d.R:169:5',
'test-u_vis_volume_3d.R:190:5', 'test-u_vis_volume_3d.R:209:5'
• This test is broken (1): 'test-smooth.R:68:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-metadata_io.R:29:3'): Demographics reports can be generated. ──
`report_unpaired <- report.on.demographics(demographics, group_column_name = "group")` did not produce any warnings.
[ FAIL 1 | WARN 0 | SKIP 91 | PASS 139 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.5.5
Check: tests
Result: ERROR
Running ‘testthat_au.R’ [11s/39s]
Running ‘testthat_vz.R’ [12s/10s]
Running the tests in ‘tests/testthat_au.R’ failed.
Complete output:
> library(testthat)
> library(fsbrain)
>
> # Break up tests to allow tests to run longer than 10 min in travis,
> # see https://github.com/travis-ci/travis-ci/issues/3849#issuecomment-345686242.
> test_check("fsbrain", filter = "^[a-u]")
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/lh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1197156 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/lh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1195465 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/lh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6293309 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/rh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1229868 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/rh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1228177 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/rh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6336335 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/mri/brain.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz'
Content type 'application/vnd.proteus.magazine' length 1441225 bytes (1.4 MB)
==================================================
downloaded 1.4 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/lh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/lh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
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downloaded 5.1 MB
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/vol_midbrain.label'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.sulc.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.sulc.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.a2009s.annot'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.aparc.annot'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/lh.cortex.label'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.a2009s.annot'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.aparc.annot'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/rh.cortex.label'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.thickness.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.thickness.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/label/vol_midbrain.label'
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Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.curv' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.curv'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.curv'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.sulc' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.pial' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.inflated'
Content type 'audio/mpeg' length 5374968 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.inflated' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.inflated'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.inflated'
Content type 'audio/mpeg' length 5522172 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.white.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.white.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.white.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.white.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.min'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.pial.min' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.min'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.max'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.pial.max' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.max'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.max'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/lh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.volume'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.volume' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.volume'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.volume'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.jacobian_white'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.jacobian_white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.jacobian_white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.jacobian_white'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/mri/T1.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/T1.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/T1.mgz'
Content type 'application/vnd.proteus.magazine' length 5352743 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
===Demographics report for 6 subjects follows=== * Demographics report for the 1 numeric columns: column min mean max num_NA age 28.000000 32.000000 35.000000 0 * Demographics report for the 2 factor columns: column num_levels num_NA subject_id 6 0 group 2 0 ===End of Demographics Report======Demographics report for 6 subjects follows=== * Demographics report for the 1 numeric columns: column min mean max num_NA age 28.000000 32.000000 35.000000 0 * Demographics report for the 2 factor columns: column num_levels num_NA subject_id 6 0 group 2 0 *Demographics report notice: the numeric data will be scaled and centered, and the report above represents the data BEFORE that operation.
===End of Demographics Report===[ FAIL 1 | WARN 0 | SKIP 91 | PASS 139 ]
══ Skipped tests (91) ══════════════════════════════════════════════════════════
• On CRAN (90): 'test-atlas.R:2:5', 'test-atlas.R:33:5', 'test-atlas.R:48:5',
'test-brain_igraph.R:6:9', 'test-brainview_magic.R:3:5',
'test-coloredmesh.R:4:5', 'test-coloredmesh.R:18:5',
'test-coloredmesh.R:33:5', 'test-coloredmesh.R:52:5',
'test-coloredmesh.R:70:5', 'test-curvature.R:4:5', 'test-curvature.R:32:5',
'test-export.R:3:5', 'test-fsdir_abstraction_group.R:2:5',
'test-fsdir_abstraction_group.R:31:5', 'test-fsdir_abstraction_group.R:62:5',
'test-fsdir_abstraction_group.R:87:5',
'test-fsdir_abstraction_group.R:108:5',
'test-fsdir_abstraction_subject.R:2:5',
'test-fsdir_abstraction_subject.R:18:5',
'test-fsdir_abstraction_subject.R:35:5',
'test-fsdir_abstraction_subject.R:54:5',
'test-fsdir_abstraction_subject.R:69:5',
'test-fsdir_abstraction_subject.R:85:5',
'test-fsdir_abstraction_subject.R:103:5',
'test-fsdir_abstraction_subject.R:160:5',
'test-fsdir_abstraction_subject.R:191:5',
'test-fsdir_abstraction_subject.R:215:5',
'test-fsdir_abstraction_subject.R:231:5', 'test-geodesic.R:3:5',
'test-geodesic.R:22:5', 'test-geodesic.R:44:5', 'test-geodesic.R:66:5',
'test-highlight.R:4:5', 'test-highlight.R:28:5', 'test-highlight.R:55:5',
'test-highlight.R:77:5', 'test-highlight.R:93:5', 'test-highlight.R:122:5',
'test-highlight.R:135:5', 'test-highlight.R:162:5', 'test-highlight.R:193:5',
'test-highlight.R:209:5', 'test-issue50.R:3:5', 'test-issue50.R:26:5',
'test-mesh_helpers.R:2:5', 'test-mesh_helpers.R:28:5',
'test-mesh_helpers.R:65:5', 'test-morph_agg.R:4:3', 'test-morph_agg.R:26:3',
'test-morph_agg.R:48:3', 'test-morph_agg.R:70:3', 'test-morph_agg.R:93:3',
'test-morph_agg.R:117:3', 'test-morph_agg.R:141:3', 'test-morph_agg.R:164:3',
'test-morph_agg.R:187:3', 'test-morph_atlas_agg.R:60:5',
'test-morph_atlas_agg.R:123:5', 'test-morph_atlas_agg.R:168:5',
'test-morph_atlas_agg.R:192:5', 'test-morph_atlas_agg.R:221:3',
'test-morph_atlas_agg.R:246:3', 'test-morph_atlas_agg.R:326:5',
'test-morph_atlas_agg.R:348:5', 'test-morph_concat.R:2:5',
'test-morph_concat.R:21:5', 'test-morph_concat.R:42:5',
'test-morph_concat.R:59:5', 'test-r_vis_volume.R:2:5',
'test-r_vis_volume.R:36:5', 'test-r_vis_volume.R:124:5',
'test-r_vis_volume.R:157:5', 'test-r_vis_volume.R:212:5',
'test-rglactions.R:3:5', 'test-rglactions.R:16:5', 'test-seg_stats.R:4:5',
'test-seg_stats.R:20:5', 'test-smooth.R:3:5', 'test-smooth.R:36:5',
'test-u_vis_volume_3d.R:4:5', 'test-u_vis_volume_3d.R:43:5',
'test-u_vis_volume_3d.R:56:5', 'test-u_vis_volume_3d.R:64:5',
'test-u_vis_volume_3d.R:74:5', 'test-u_vis_volume_3d.R:83:5',
'test-u_vis_volume_3d.R:125:5', 'test-u_vis_volume_3d.R:169:5',
'test-u_vis_volume_3d.R:190:5', 'test-u_vis_volume_3d.R:209:5'
• This test is broken (1): 'test-smooth.R:68:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-metadata_io.R:29:3'): Demographics reports can be generated. ──
`report_unpaired <- report.on.demographics(demographics, group_column_name = "group")` did not produce any warnings.
[ FAIL 1 | WARN 0 | SKIP 91 | PASS 139 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.5.5
Check: tests
Result: ERROR
Running ‘testthat_au.R’ [11s/39s]
Running ‘testthat_vz.R’
Running the tests in ‘tests/testthat_au.R’ failed.
Complete output:
> library(testthat)
> library(fsbrain)
>
> # Break up tests to allow tests to run longer than 10 min in travis,
> # see https://github.com/travis-ci/travis-ci/issues/3849#issuecomment-345686242.
> test_check("fsbrain", filter = "^[a-u]")
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/lh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1197156 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/lh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1195465 bytes (1.1 MB)
==================================================
downloaded 1.1 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/lh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/lh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6293309 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/rh.aparc.a2009s.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.a2009s.annot'
Content type 'text/html; charset=iso-8859-1' length 1229868 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/rh.aparc.annot' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.aparc.annot'
Content type 'text/html; charset=iso-8859-1' length 1228177 bytes (1.2 MB)
==================================================
downloaded 1.2 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/rh.cortex.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/rh.cortex.label'
Content type 'text/html; charset=iso-8859-1' length 6336335 bytes (6.0 MB)
==================================================
downloaded 6.0 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/mri/brain.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/brain.mgz'
Content type 'application/vnd.proteus.magazine' length 1441225 bytes (1.4 MB)
==================================================
downloaded 1.4 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/lh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/lh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.white'
Content type 'audio/mpeg' length 5374135 bytes (5.1 MB)
==================================================
downloaded 5.1 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/rh.thickness' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/rh.white' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.white'
Content type 'audio/mpeg' length 5521339 bytes (5.3 MB)
==================================================
downloaded 5.3 MB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.thickness.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/lh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area'
Content type 'audio/mpeg' length 596991 bytes (582 KB)
==================================================
downloaded 582 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/rh.area' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
==================================================
downloaded 598 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/lh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/surf/rh.area.fwhm10.fsaverage.mgh'
Content type 'text/html; charset=iso-8859-1' length 668600 bytes (652 KB)
==================================================
downloaded 652 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/mri/aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 363262 bytes (354 KB)
==================================================
downloaded 354 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/mri/aparc+aseg.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aparc+aseg.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/mri/aparc+aseg.mgz'
Content type 'application/vnd.proteus.magazine' length 426342 bytes (416 KB)
==================================================
downloaded 416 KB
Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject1/label/vol_midbrain.label' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/vol_midbrain.label'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject1/label/vol_midbrain.label'
Content type 'text/html; charset=iso-8859-1' length 260601 bytes (254 KB)
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.area.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.area.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.min'
Content type 'audio/mpeg' length 613347 bytes (598 KB)
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.pial.max'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.pial.max'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.volume'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.volume'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.jacobian_white'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.jacobian_white'
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Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/lh.sulc.fwhm10.fsaverage.mgh'
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trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/surf/rh.sulc.fwhm10.fsaverage.mgh'
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Download file to '/data/gannet/ripley/.local/share/fsbrain/subjects_dir/subject2/mri/T1.mgz' from 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/T1.mgz'
trying URL 'http://rcmd.org/projects/nitestdata/subjects_dir/subject2/mri/T1.mgz'
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===Demographics report for 6 subjects follows=== * Demographics report for the 1 numeric columns: column min mean max num_NA age 28.000000 32.000000 35.000000 0 * Demographics report for the 2 factor columns: column num_levels num_NA subject_id 6 0 group 2 0 ===End of Demographics Report======Demographics report for 6 subjects follows=== * Demographics report for the 1 numeric columns: column min mean max num_NA age 28.000000 32.000000 35.000000 0 * Demographics report for the 2 factor columns: column num_levels num_NA subject_id 6 0 group 2 0 *Demographics report notice: the numeric data will be scaled and centered, and the report above represents the data BEFORE that operation.
===End of Demographics Report===[ FAIL 1 | WARN 0 | SKIP 91 | PASS 139 ]
══ Skipped tests (91) ══════════════════════════════════════════════════════════
• On CRAN (90): 'test-atlas.R:2:5', 'test-atlas.R:33:5', 'test-atlas.R:48:5',
'test-brain_igraph.R:6:9', 'test-brainview_magic.R:3:5',
'test-coloredmesh.R:4:5', 'test-coloredmesh.R:18:5',
'test-coloredmesh.R:33:5', 'test-coloredmesh.R:52:5',
'test-coloredmesh.R:70:5', 'test-curvature.R:4:5', 'test-curvature.R:32:5',
'test-export.R:3:5', 'test-fsdir_abstraction_group.R:2:5',
'test-fsdir_abstraction_group.R:31:5', 'test-fsdir_abstraction_group.R:62:5',
'test-fsdir_abstraction_group.R:87:5',
'test-fsdir_abstraction_group.R:108:5',
'test-fsdir_abstraction_subject.R:2:5',
'test-fsdir_abstraction_subject.R:18:5',
'test-fsdir_abstraction_subject.R:35:5',
'test-fsdir_abstraction_subject.R:54:5',
'test-fsdir_abstraction_subject.R:69:5',
'test-fsdir_abstraction_subject.R:85:5',
'test-fsdir_abstraction_subject.R:103:5',
'test-fsdir_abstraction_subject.R:160:5',
'test-fsdir_abstraction_subject.R:191:5',
'test-fsdir_abstraction_subject.R:215:5',
'test-fsdir_abstraction_subject.R:231:5', 'test-geodesic.R:3:5',
'test-geodesic.R:22:5', 'test-geodesic.R:44:5', 'test-geodesic.R:66:5',
'test-highlight.R:4:5', 'test-highlight.R:28:5', 'test-highlight.R:55:5',
'test-highlight.R:77:5', 'test-highlight.R:93:5', 'test-highlight.R:122:5',
'test-highlight.R:135:5', 'test-highlight.R:162:5', 'test-highlight.R:193:5',
'test-highlight.R:209:5', 'test-issue50.R:3:5', 'test-issue50.R:26:5',
'test-mesh_helpers.R:2:5', 'test-mesh_helpers.R:28:5',
'test-mesh_helpers.R:65:5', 'test-morph_agg.R:4:3', 'test-morph_agg.R:26:3',
'test-morph_agg.R:48:3', 'test-morph_agg.R:70:3', 'test-morph_agg.R:93:3',
'test-morph_agg.R:117:3', 'test-morph_agg.R:141:3', 'test-morph_agg.R:164:3',
'test-morph_agg.R:187:3', 'test-morph_atlas_agg.R:60:5',
'test-morph_atlas_agg.R:123:5', 'test-morph_atlas_agg.R:168:5',
'test-morph_atlas_agg.R:192:5', 'test-morph_atlas_agg.R:221:3',
'test-morph_atlas_agg.R:246:3', 'test-morph_atlas_agg.R:326:5',
'test-morph_atlas_agg.R:348:5', 'test-morph_concat.R:2:5',
'test-morph_concat.R:21:5', 'test-morph_concat.R:42:5',
'test-morph_concat.R:59:5', 'test-r_vis_volume.R:2:5',
'test-r_vis_volume.R:36:5', 'test-r_vis_volume.R:124:5',
'test-r_vis_volume.R:157:5', 'test-r_vis_volume.R:212:5',
'test-rglactions.R:3:5', 'test-rglactions.R:16:5', 'test-seg_stats.R:4:5',
'test-seg_stats.R:20:5', 'test-smooth.R:3:5', 'test-smooth.R:36:5',
'test-u_vis_volume_3d.R:4:5', 'test-u_vis_volume_3d.R:43:5',
'test-u_vis_volume_3d.R:56:5', 'test-u_vis_volume_3d.R:64:5',
'test-u_vis_volume_3d.R:74:5', 'test-u_vis_volume_3d.R:83:5',
'test-u_vis_volume_3d.R:125:5', 'test-u_vis_volume_3d.R:169:5',
'test-u_vis_volume_3d.R:190:5', 'test-u_vis_volume_3d.R:209:5'
• This test is broken (1): 'test-smooth.R:68:5'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-metadata_io.R:29:3'): Demographics reports can be generated. ──
`report_unpaired <- report.on.demographics(demographics, group_column_name = "group")` did not produce any warnings.
[ FAIL 1 | WARN 0 | SKIP 91 | PASS 139 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Current CRAN status: NOTE: 2, OK: 11
Version: 0.1.5
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘curl’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Current CRAN status: OK: 13
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.