CRAN Package Check Results for Maintainer ‘Vijay Patil <vpatil at usgs.gov>’

Last updated on 2024-11-09 01:50:12 CET.

Package	ERROR	OK
algaeClassify	4	9

Package algaeClassify

Current CRAN status: ERROR: 4, OK: 9

Version: 2.0.3
Check: examples
Result: ERROR Running examples in ‘algaeClassify-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: gnr_simple > ### Title: checks species names against a variety of online databases > ### supports fuzzy partial matching, using the Global Names Resolver > ### (https://resolver.globalnames.org/) > ### Aliases: gnr_simple > > ### ** Examples > > #Visit https://resolver.globalnames.org/data_sources to see all possible > #data sources for name checking. > name<-"Aphanazomenon flos-aquae" > #sourceid=3 for ITIS database,195 for Algaebase > gnr_simple(name,sourceid=3) #search for ITIS matches Warning: Failed to open 'http://resolver.globalnames.org/name_resolvers.json?names=Aphanazomenon+flos-aquae&best_match_only=true&data_source_ids=3': The requested URL returned error: 500 Error: lexical error: invalid char in json text. Error in readLines(con, warn = (right here) ------^ Execution halted Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 2.0.3
Check: examples
Result: ERROR Running examples in ‘algaeClassify-Ex.R’ failed The error most likely occurred in: > ### Name: gnr_df > ### Title: Wrapper function to apply gnr_simple across a data.frame or list > ### of species names > ### Aliases: gnr_df > > ### ** Examples > > data(lakegeneva) > #example dataset with 50 rows > > lakegeneva<- genus_species_extract(lakegeneva,'phyto_name') > lakegeneva$genus_species <- trimws(paste(lakegeneva$genus, + lakegeneva$species)) > > #checking for matches from all GNRS sources: > lakegeneva.namematches <- gnr_df(lakegeneva,"genus_species") Error: lexical error: invalid char in json text. Error in readLines(con, warn = (right here) ------^ Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 2.0.3
Check: examples
Result: ERROR Running examples in 'algaeClassify-Ex.R' failed The error most likely occurred in: > ### Name: gnr_simple > ### Title: checks species names against a variety of online databases > ### supports fuzzy partial matching, using the Global Names Resolver > ### (https://resolver.globalnames.org/) > ### Aliases: gnr_simple > > ### ** Examples > > #Visit https://resolver.globalnames.org/data_sources to see all possible > #data sources for name checking. > name<-"Aphanazomenon flos-aquae" > #sourceid=3 for ITIS database,195 for Algaebase > gnr_simple(name,sourceid=3) #search for ITIS matches Warning: Failed to open 'http://resolver.globalnames.org/name_resolvers.json?names=Aphanazomenon+flos-aquae&best_match_only=true&data_source_ids=3': The requested URL returned error: 500 Error: lexical error: invalid char in json text. Error in readLines(con, warn = (right here) ------^ Execution halted Flavor: r-oldrel-windows-x86_64