CRAN Package Check Results for Maintainer ‘Taiyun Wei <weitaiyun at gmail.com>’

Last updated on 2024-11-21 19:53:20 CET.

Package	ERROR	OK
corrplot	1	12

Package corrplot

Current CRAN status: ERROR: 1, OK: 12

Version: 0.95
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building ‘corrplot-intro.Rmd’ using rmarkdown ** Processing: webimg/intro-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 112505 bytes Input file size = 112739 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94548 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 94548 Output IDAT size = 94548 bytes (17957 bytes decrease) Output file size = 94626 bytes (18113 bytes = 16.07% decrease) ** Processing: webimg/intro-2.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28579 bytes Input file size = 28693 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27024 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 27024 Output IDAT size = 27024 bytes (1555 bytes decrease) Output file size = 27102 bytes (1591 bytes = 5.54% decrease) ** Processing: webimg/intro-3.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 111405 bytes Input file size = 111639 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93260 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93260 Output IDAT size = 93260 bytes (18145 bytes decrease) Output file size = 93338 bytes (18301 bytes = 16.39% decrease) ** Processing: webimg/intro-4.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 111565 bytes Input file size = 111799 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93560 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93560 Output IDAT size = 93560 bytes (18005 bytes decrease) Output file size = 93638 bytes (18161 bytes = 16.24% decrease) ** Processing: webimg/intro-5.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 40759 bytes Input file size = 40885 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 37397 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 37397 Output IDAT size = 37397 bytes (3362 bytes decrease) Output file size = 37475 bytes (3410 bytes = 8.34% decrease) ** Processing: webimg/intro-6.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 26595 bytes Input file size = 26709 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 25984 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24414 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 24414 Output IDAT size = 24414 bytes (2181 bytes decrease) Output file size = 24492 bytes (2217 bytes = 8.30% decrease) ** Processing: webimg/intro-7.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 77325 bytes Input file size = 77511 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66110 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 66110 Output IDAT size = 66110 bytes (11215 bytes decrease) Output file size = 66188 bytes (11323 bytes = 14.61% decrease) ** Processing: webimg/intro-8.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 100720 bytes Input file size = 100942 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 84780 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 84780 Output IDAT size = 84780 bytes (15940 bytes decrease) Output file size = 84858 bytes (16084 bytes = 15.93% decrease) ** Processing: webimg/intro-9.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 110959 bytes Input file size = 111193 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103356 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 103356 Output IDAT size = 103356 bytes (7603 bytes decrease) Output file size = 103434 bytes (7759 bytes = 6.98% decrease) ** Processing: webimg/hclust-1.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 111661 bytes Input file size = 111895 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93499 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 93499 Output IDAT size = 93499 bytes (18162 bytes decrease) Output file size = 93577 bytes (18318 bytes = 16.37% decrease) ** Processing: webimg/hclust-2.png 672x672 pixels, 3x8 bits/pixel, RGB Input IDAT size = 30646 bytes Input file size = 30760 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29916 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29054 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 29054 Output IDAT size = 29054 bytes (1592 bytes decrease) Output file size = 29132 bytes (1628 bytes = 5.29% decrease) *** caught segfault *** address 0x1, cause 'memory not mapped' Traceback: 1: method$fun(x, control = control) 2: system.time(order <- method$fun(x, control = control)) 3: seriate.dist(d_corr, method = method, ...) 4: seriate(d_corr, method = method, ...) 5: dist2order(Z, "ARSA") 6: eval(expr, envir) 7: eval(expr, envir) 8: withVisible(eval(expr, envir)) 9: withCallingHandlers(code, message = function (cnd) { watcher$capture_plot_and_output() if (on_message$capture) { watcher$push(cnd) } if (on_message$silence) { invokeRestart("muffleMessage") }}, warning = function (cnd) { if (getOption("warn") >= 2 || getOption("warn") < 0) { return() } watcher$capture_plot_and_output() if (on_warning$capture) { cnd <- sanitize_call(cnd) watcher$push(cnd) } if (on_warning$silence) { invokeRestart("muffleWarning") }}, error = function (cnd) { watcher$capture_plot_and_output() cnd <- sanitize_call(cnd) watcher$push(cnd) switch(on_error, continue = invokeRestart("eval_continue"), stop = invokeRestart("eval_stop"), error = invokeRestart("eval_error", cnd))}) 10: eval(call) 11: eval(call) 12: with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers) 13: doWithOneRestart(return(expr), restart) 14: withOneRestart(expr, restarts[[1L]]) 15: withRestartList(expr, restarts[-nr]) 16: doWithOneRestart(return(expr), restart) 17: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 18: withRestartList(expr, restarts[-nr]) 19: doWithOneRestart(return(expr), restart) 20: withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]]) 21: withRestartList(expr, restarts) 22: withRestarts(with_handlers({ for (expr in tle$exprs) { ev <- withVisible(eval(expr, envir)) watcher$capture_plot_and_output() watcher$print_value(ev$value, ev$visible, envir) } TRUE}, handlers), eval_continue = function() TRUE, eval_stop = function() FALSE, eval_error = function(cnd) { signalCondition(cnd) stop(cnd) }) 23: evaluate::evaluate(...) 24: evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)) 25: in_dir(input_dir(), expr) 26: in_input_dir(evaluate(code, envir = env, new_device = FALSE, keep_warning = if (is.numeric(options$warning)) TRUE else options$warning, keep_message = if (is.numeric(options$message)) TRUE else options$message, stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))) 27: eng_r(options) 28: block_exec(params) 29: call_block(x) 30: process_group(group) 31: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)) 32: xfun:::handle_error(withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) if (xfun::pkg_available("rlang", "1.0.0")) rlang::entrace(e)), function(loc) { setwd(wd) write_utf8(res, output %n% stdout()) paste0("\nQuitting from lines ", loc) }, if (labels[i] != "") sprintf(" [%s]", labels[i]), get_loc) 33: process_file(text, output) 34: knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet) 35: rmarkdown::render(file, encoding = encoding, quiet = quiet, envir = globalenv(), output_dir = getwd(), ...) 36: vweave_rmarkdown(...) 37: engine$weave(file, quiet = quiet, encoding = enc) 38: doTryCatch(return(expr), name, parentenv, handler) 39: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 40: tryCatchList(expr, classes, parentenv, handlers) 41: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))}) 42: tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/corrplot.Rcheck/vign_test/corrplot", skip = TRUE, ser_elibs = "/tmp/RtmpGRj0MH/file34c3d749f8289.rds") An irrecoverable exception occurred. R is aborting now ... Flavor: r-devel-linux-x86_64-fedora-gcc