CRAN Package Check Results for Maintainer ‘William Gearty <willgearty at gmail.com>’

Last updated on 2026-05-05 11:52:11 CEST.

Package	ERROR	OK
deeptime	1	12
deeptimedata		13
rphylopic		13
rredlist		13

Package deeptime

Current CRAN status: ERROR: 1, OK: 12

Version: 2.3.1
Check: tests
Result: ERROR Running ‘testthat.R’ [60s/73s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(deeptime) > > test_check("deeptime") viewport[GRID.VP.403] viewport[GRID.VP.554] Saving _problems/test-guides-194.R Saving _problems/test-guides-210.R NULL NULL NULL [ FAIL 2 | WARN 0 | SKIP 37 | PASS 131 ] ══ Skipped tests (37) ══════════════════════════════════════════════════════════ • On CRAN (27): 'test-coord_geo.R:55:1', 'test-coord_geo.R:80:3', 'test-coord_geo.R:102:1', 'test-coord_geo.R:117:1', 'test-coord_geo.R:132:1', 'test-coord_geo.R:153:1', 'test-coord_trans_flip.R:1:1', 'test-coord_trans_xy.R:1:1', 'test-disparity_through_time.R:1:1', 'test-facet_color.R:1:1', 'test-facet_color.R:78:1', 'test-facet_color.R:121:1', 'test-facet_color.R:167:1', 'test-get_scale_data.R:14:3', 'test-guides.R:1:1', 'test-guides.R:73:1', 'test-guides.R:88:1', 'test-guides.R:103:1', 'test-guides.R:125:1', 'test-patterns.R:42:1', 'test-patterns.R:55:1', 'test-patterns.R:76:1', 'test-phylomorpho.R:1:1', 'test-points_range.R:1:1', 'test-scales.R:1:1', 'test-scales.R:14:1', 'test-scales.R:27:1' • R.Version()$os != "mingw32" is TRUE (2): 'test-patterns.R:9:3', 'test-patterns.R:99:3' • {ggtree} is not installed (8): 'test-coord_geo.R:171:3', 'test-coord_geo.R:183:3', 'test-coord_geo_polar.R:1:1', 'test-coord_geo_radial.R:1:1', 'test-geom_text_phylo.R:3:3', 'test-ggarrange2.R:25:3', 'test-guides.R:149:3', 'test-guides.R:163:3' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-guides.R:184:3'): guide_geo works with coord_geo_radial ──────── Error in `revts(ggtree(tree))`: could not find function "revts" ── Error ('test-guides.R:200:3'): ggtree scale works with only fossil taxa ───── Error in `ggtree(ceratopsianTreeRaia, position = position_nudge(x = -ceratopsianTreeRaia$root.time))`: could not find function "ggtree" [ FAIL 2 | WARN 0 | SKIP 37 | PASS 131 ] Deleting unused snapshots: 'coord_geo/scale-on-fossil-ggtree-new.svg', 'coord_geo/scale-on-ggtree-new.svg', 'coord_geo/scales-on-different-sides1-new.svg', 'coord_geo/scales-on-different-sides2-new.svg', 'coord_geo_polar/coord-geo-polar-grey-new.svg', 'coord_geo_polar/coord-geo-polar-new.svg', 'coord_geo_polar/coord-geo-polar-pos-new.svg', 'coord_geo_polar/scale-on-fossil-ggtree-new.svg', 'coord_geo_polar/scale-on-fossil-ggtree-with-labels-new.svg', 'coord_geo_polar/stacked-scales-new.svg', 'coord_geo_radial/coord-geo-radial-new.svg', 'coord_geo_radial/scale-on-fossil-ggtree-new.svg', 'coord_geo_radial/scale-on-fossil-ggtree-with-labels-new.svg', 'coord_geo_radial/stacked-scales-new.svg', 'geom_text_phylo/geom-text-phylo-new.svg', 'ggarrange2/double-ggarrange2-layout-new.svg', 'ggarrange2/double-ggarrange2-new.svg', 'ggarrange2/ggarrange2-no-dims-layout-new.svg', …, 'patterns/scale-fill-geopattern-na2-new.svg', and 'patterns/scale-fill-geopattern-new.svg' Error: ! Test failures. Execution halted Flavor: r-release-linux-x86_64

Version: 2.3.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘coord.Rmd’ using rmarkdown --- finished re-building ‘coord.Rmd’ --- re-building ‘coord_geo.Rmd’ using rmarkdown --- finished re-building ‘coord_geo.Rmd’ --- re-building ‘geo.Rmd’ using rmarkdown --- finished re-building ‘geo.Rmd’ --- re-building ‘ggarrange2.Rmd’ using rmarkdown Quitting from ggarrange2.Rmd:14-23 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'ggtree' --- Backtrace: ▆ 1. └─base::library(ggtree) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ggarrange2.Rmd' failed with diagnostics: there is no package called 'ggtree' --- failed re-building ‘ggarrange2.Rmd’ --- re-building ‘phylogenies.Rmd’ using rmarkdown Quitting from phylogenies.Rmd:18-32 [unnamed-chunk-2] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `library()`: ! there is no package called 'ggtree' --- Backtrace: ▆ 1. └─base::library(ggtree) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'phylogenies.Rmd' failed with diagnostics: there is no package called 'ggtree' --- failed re-building ‘phylogenies.Rmd’ --- re-building ‘time.Rmd’ using rmarkdown --- finished re-building ‘time.Rmd’ --- re-building ‘traits.Rmd’ using rmarkdown --- finished re-building ‘traits.Rmd’ SUMMARY: processing the following files failed: ‘ggarrange2.Rmd’ ‘phylogenies.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-release-linux-x86_64

Package deeptimedata

Current CRAN status: OK: 13

Package rphylopic

Current CRAN status: OK: 13

Package rredlist

Current CRAN status: OK: 13