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It aims to identify candidate genes that are “differentially methylated” between cases and controls. It applies Student’s t-test and delta beta analysis to identify candidate genes containing multiple “CpG sites”.
| Version: | 0.9.0 |
| Depends: | R (≥ 3.1.0) |
| Imports: | graphics, stats, utils |
| Suggests: | knitr, rmarkdown |
| Published: | 2016-10-20 |
| DOI: | 10.32614/CRAN.package.ABC.RAP |
| Author: | Abdulmonem Alsaleh [cre, aut], Robert Weeks [aut], Ian Morison [aut], RStudio [ctb] |
| Maintainer: | Abdulmonem Alsaleh <a.alsaleh at hotmail.co.nz> |
| Contact: | Ian Morison <ian.morison@otago.ac.nz> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| SystemRequirements: | GNU make |
| CRAN checks: | ABC.RAP results |
| Reference manual: | ABC.RAP.pdf |
| Vignettes: |
Array Based CpG Region Analysis Package (ABC.RAP) |
| Package source: | ABC.RAP_0.9.0.tar.gz |
| Windows binaries: | r-devel: ABC.RAP_0.9.0.zip, r-release: ABC.RAP_0.9.0.zip, r-oldrel: ABC.RAP_0.9.0.zip |
| macOS binaries: | r-release (arm64): ABC.RAP_0.9.0.tgz, r-oldrel (arm64): ABC.RAP_0.9.0.tgz, r-release (x86_64): ABC.RAP_0.9.0.tgz, r-oldrel (x86_64): ABC.RAP_0.9.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.