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Finds, prioritizes and deletes erroneous taxa in a phylogenetic tree. This package calculates scores for taxa in a tree. Higher score means the taxon is more erroneous. If the score is zero for a taxon, the taxon is not erroneous. This package also can remove all erroneous taxa automatically by iterating score calculation and pruning taxa with the highest score.
| Version: | 3.0.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ape, Rcpp, RcppProgress |
| LinkingTo: | Rcpp, RcppProgress |
| Suggests: | knitr, rmarkdown |
| Published: | 2024-07-10 |
| DOI: | 10.32614/CRAN.package.Apoderoides |
| Author: | Satoshi Aoki [aut, cph, cre], Keita Fukasawa [ctb] |
| Maintainer: | Satoshi Aoki <aokis1ll1 at gmail.com> |
| BugReports: | https://github.com/Sa-to-shi-A-o-ki/Apoderoides/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/Sa-to-shi-A-o-ki/Apoderoides |
| NeedsCompilation: | yes |
| Materials: | NEWS |
| CRAN checks: | Apoderoides results |
| Reference manual: | Apoderoides.pdf |
| Vignettes: |
Apoderoides Tutorial |
| Package source: | Apoderoides_3.0.0.tar.gz |
| Windows binaries: | r-devel: Apoderoides_3.0.0.zip, r-release: Apoderoides_3.0.0.zip, r-oldrel: Apoderoides_3.0.0.zip |
| macOS binaries: | r-release (arm64): Apoderoides_3.0.0.tgz, r-oldrel (arm64): Apoderoides_3.0.0.tgz, r-release (x86_64): Apoderoides_3.0.0.tgz, r-oldrel (x86_64): Apoderoides_3.0.0.tgz |
| Old sources: | Apoderoides archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.