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A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
Version: | 2.0.3 |
Depends: | R (≥ 3.0.2) |
Imports: | methods, crochet (≥ 2.3.0) |
Suggests: | data.table, LinkedMatrix, tinytest |
Published: | 2020-07-08 |
DOI: | 10.32614/CRAN.package.BEDMatrix |
Author: | Alexander Grueneberg [aut, cre], Gustavo de los Campos [ctb] |
Maintainer: | Alexander Grueneberg <cran at agrueneberg.info> |
BugReports: | https://github.com/QuantGen/BEDMatrix/issues |
License: | MIT + file LICENSE |
URL: | https://github.com/QuantGen/BEDMatrix |
NeedsCompilation: | yes |
Citation: | BEDMatrix citation info |
Materials: | README NEWS |
CRAN checks: | BEDMatrix results |
Reference manual: | BEDMatrix.pdf |
Package source: | BEDMatrix_2.0.3.tar.gz |
Windows binaries: | r-devel: BEDMatrix_2.0.3.zip, r-release: BEDMatrix_2.0.3.zip, r-oldrel: BEDMatrix_2.0.3.zip |
macOS binaries: | r-release (arm64): BEDMatrix_2.0.3.tgz, r-oldrel (arm64): BEDMatrix_2.0.3.tgz, r-release (x86_64): BEDMatrix_2.0.3.tgz, r-oldrel (x86_64): BEDMatrix_2.0.3.tgz |
Old sources: | BEDMatrix archive |
Reverse depends: | BGData, EBPRS |
Reverse imports: | jackstraw, mrMLM, phers |
Reverse suggests: | gcatest, genio, groupedSurv, lfa, popkin, simtrait, symDMatrix |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.