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A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (<https://www.cog-genomics.org/plink2>), the whole genome association analysis toolset, without loading the entire file into memory.
| Version: | 2.0.4 |
| Depends: | R (≥ 3.4.0) |
| Imports: | methods, crochet (≥ 2.3.0) |
| Suggests: | data.table, LinkedMatrix, tinytest |
| Published: | 2024-09-06 |
| DOI: | 10.32614/CRAN.package.BEDMatrix |
| Author: | Alexander Grueneberg [aut, cre], Gustavo de los Campos [ctb] |
| Maintainer: | Alexander Grueneberg <cran at agrueneberg.info> |
| BugReports: | https://github.com/QuantGen/BEDMatrix/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/QuantGen/BEDMatrix |
| NeedsCompilation: | yes |
| Citation: | BEDMatrix citation info |
| Materials: | README NEWS |
| CRAN checks: | BEDMatrix results |
| Reference manual: | BEDMatrix.pdf |
| Package source: | BEDMatrix_2.0.4.tar.gz |
| Windows binaries: | r-devel: BEDMatrix_2.0.4.zip, r-release: BEDMatrix_2.0.4.zip, r-oldrel: BEDMatrix_2.0.4.zip |
| macOS binaries: | r-release (arm64): BEDMatrix_2.0.4.tgz, r-oldrel (arm64): BEDMatrix_2.0.4.tgz, r-release (x86_64): BEDMatrix_2.0.4.tgz, r-oldrel (x86_64): BEDMatrix_2.0.4.tgz |
| Old sources: | BEDMatrix archive |
| Reverse depends: | BGData, EBPRS |
| Reverse imports: | jackstraw, mrMLM, phers |
| Reverse suggests: | gcatest, genio, groupedSurv, lfa, popkin, simtrait, symDMatrix |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.