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Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.
| Version: | 1.2.0 |
| Depends: | R (≥ 3.5.0), ggplot2 |
| Imports: | magrittr, deSolve, dplyr, tibble, colorspace, patchwork, latex2exp, tidyr, pracma, ape |
| Suggests: | knitr, rmarkdown |
| Published: | 2023-10-24 |
| DOI: | 10.32614/CRAN.package.CRABS |
| Author: | Bjørn Tore Kopperud [aut, cre], Sebastian Höhna [aut], Andrew F. Magee [aut], Jérémy Andréoletti [aut] |
| Maintainer: | Bjørn Tore Kopperud <kopperud at protonmail.com> |
| License: | GPL-3 |
| URL: | https://github.com/afmagee/CRABS |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| In views: | Phylogenetics |
| CRAN checks: | CRABS results |
| Reference manual: | CRABS.pdf |
| Package source: | CRABS_1.2.0.tar.gz |
| Windows binaries: | r-devel: CRABS_1.2.0.zip, r-release: CRABS_1.2.0.zip, r-oldrel: CRABS_1.2.0.zip |
| macOS binaries: | r-release (arm64): CRABS_1.2.0.tgz, r-oldrel (arm64): CRABS_1.2.0.tgz, r-release (x86_64): CRABS_1.2.0.tgz, r-oldrel (x86_64): CRABS_1.2.0.tgz |
| Old sources: | CRABS archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.