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CauMedi: Cell Type-Specific Causal Mediation Models for Single-Cell Data

A causal mediation framework for cell type-specific single-cell data based on joint mediator multilevel models. The framework jointly models overdispersed counts and zero inflation for the mediators.

Version: 0.1.1
Imports: glmnet
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0)
Published: 2026-08-04
DOI: 10.32614/CRAN.package.CauMedi (may not be active yet)
Author: Seungjun Ahn [aut], Donald Porchia [aut], Weijia Fu ORCID iD [cre, aut], Zhigang Li [ctb]
Maintainer: Weijia Fu <weijia.fu at mountsinai.org>
License: MIT + file LICENSE
NeedsCompilation: no
CRAN checks: CauMedi results

Documentation:

Reference manual: CauMedi.html , CauMedi.pdf
Vignettes: CauMedi (source, R code)

Downloads:

Package source: CauMedi_0.1.1.tar.gz
Windows binaries: r-devel: not available, r-release: CauMedi_0.1.1.zip, r-oldrel: CauMedi_0.1.1.zip
macOS binaries: r-release (arm64): CauMedi_0.1.1.tgz, r-oldrel (arm64): CauMedi_0.1.1.tgz, r-release (x86_64): CauMedi_0.1.1.tgz, r-oldrel (x86_64): CauMedi_0.1.1.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=CauMedi to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.