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CleanBSequences: Curing of Biological Sequences

Curates biological sequences massively, quickly, without errors and without internet connection. Biological sequences curing is performed by aligning the forward and / or revers primers or ends of cloning vectors with the sequences to be cleaned. After the alignment, new subsequences are generated without biological fragment not desired by the user. Pozzi et al (2020) <doi:10.1007/s00438-020-01671-z>.

Version: 2.3.0
Depends: pwalign, Biostrings
Published: 2024-05-09
DOI: 10.32614/CRAN.package.CleanBSequences
Author: Florencia I. Pozzi, Silvina A. Felitti
Maintainer: Florencia I. Pozzi <florenciapoz at hotmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
CRAN checks: CleanBSequences results

Documentation:

Reference manual: CleanBSequences.pdf

Downloads:

Package source: CleanBSequences_2.3.0.tar.gz
Windows binaries: r-devel: CleanBSequences_2.3.0.zip, r-release: CleanBSequences_2.3.0.zip, r-oldrel: CleanBSequences_1.4.0.zip
macOS binaries: r-release (arm64): CleanBSequences_2.3.0.tgz, r-oldrel (arm64): CleanBSequences_1.4.0.tgz, r-release (x86_64): CleanBSequences_1.4.0.tgz, r-oldrel (x86_64): CleanBSequences_1.4.0.tgz
Old sources: CleanBSequences archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=CleanBSequences to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.