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Curates biological sequences massively, quickly, without errors and without internet connection. Biological sequences curing is performed by aligning the forward and / or revers primers or ends of cloning vectors with the sequences to be cleaned. After the alignment, new subsequences are generated without biological fragment not desired by the user. Pozzi et al (2020) <doi:10.1007/s00438-020-01671-z>.
| Version: | 2.3.0 |
| Depends: | pwalign, Biostrings |
| Published: | 2024-05-09 |
| DOI: | 10.32614/CRAN.package.CleanBSequences |
| Author: | Florencia I. Pozzi, Silvina A. Felitti |
| Maintainer: | Florencia I. Pozzi <florenciapoz at hotmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | CleanBSequences results |
| Reference manual: | CleanBSequences.pdf |
| Package source: | CleanBSequences_2.3.0.tar.gz |
| Windows binaries: | r-devel: CleanBSequences_2.3.0.zip, r-release: CleanBSequences_2.3.0.zip, r-oldrel: CleanBSequences_1.4.0.zip |
| macOS binaries: | r-release (arm64): CleanBSequences_2.3.0.tgz, r-oldrel (arm64): CleanBSequences_1.4.0.tgz, r-release (x86_64): CleanBSequences_1.4.0.tgz, r-oldrel (x86_64): CleanBSequences_1.4.0.tgz |
| Old sources: | CleanBSequences archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.