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CovidMutations: Mutation Analysis Toolkit for COVID-19 (Coronavirus Disease 2019)

A feasible framework for mutation analysis and reverse transcription polymerase chain reaction (RT-PCR) assay evaluation of COVID-19, including mutation profile visualization, statistics and mutation ratio of each assay. The mutation ratio is conducive to evaluating the coverage of RT-PCR assays in large-sized samples. Mercatelli, D. and Giorgi, F. M. (2020) <doi:10.20944/preprints202004.0529.v1>.

Version: 0.1.3
Depends: R (≥ 3.6)
Imports: ggplot2, cowplot, seqinr, stringr, grDevices, graphics, utils, ggpubr, dplyr, VennDiagram
Suggests: testthat
Published: 2020-09-18
DOI: 10.32614/CRAN.package.CovidMutations
Author: Shaoqian Ma ORCID iD [aut, cre], Yongyou Zhang ORCID iD [aut]
Maintainer: Shaoqian Ma <shaoqianma at qq.com>
BugReports: https://github.com/MSQ-123/CovidMutations/issues
License: Artistic-2.0
URL: https://github.com/MSQ-123/CovidMutations
NeedsCompilation: no
Materials: README NEWS
In views: Epidemiology
CRAN checks: CovidMutations results

Documentation:

Reference manual: CovidMutations.pdf

Downloads:

Package source: CovidMutations_0.1.3.tar.gz
Windows binaries: r-devel: CovidMutations_0.1.3.zip, r-release: CovidMutations_0.1.3.zip, r-oldrel: CovidMutations_0.1.3.zip
macOS binaries: r-release (arm64): CovidMutations_0.1.3.tgz, r-oldrel (arm64): CovidMutations_0.1.3.tgz, r-release (x86_64): CovidMutations_0.1.3.tgz, r-oldrel (x86_64): CovidMutations_0.1.3.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=CovidMutations to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.