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Exploratory data analysis and data visualization for biological sequence (DNA and protein) data. Seqinr includes utilities for sequence data management under the ACNUC system described in Gouy, M. et al. (1984) Nucleic Acids Res. 12:121-127 <doi:10.1093/nar/12.1Part1.121>.
| Version: | 4.2-36 |
| Depends: | R (≥ 2.10.0) |
| Imports: | ade4, segmented |
| Published: | 2023-12-08 |
| DOI: | 10.32614/CRAN.package.seqinr |
| Author: | Delphine Charif [aut], Olivier Clerc [ctb], Carolin Frank [ctb], Jean R. Lobry [aut, cph], Anamaria Necşulea [ctb], Leonor Palmeira [ctb], Simon Penel [cre], Guy Perrière [ctb] |
| Maintainer: | Simon Penel <simon.penel at univ-lyon1.fr> |
| BugReports: | https://github.com/lbbe-software/seqinr/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://seqinr.r-forge.r-project.org/, https://github.com/lbbe-software/seqinr |
| NeedsCompilation: | yes |
| SystemRequirements: | zlib headers and library. |
| Citation: | seqinr citation info |
| Materials: | NEWS |
| In views: | Omics |
| CRAN checks: | seqinr results |
| Reference manual: | seqinr.pdf |
| Package source: | seqinr_4.2-36.tar.gz |
| Windows binaries: | r-devel: seqinr_4.2-36.zip, r-release: seqinr_4.2-36.zip, r-oldrel: seqinr_4.2-36.zip |
| macOS binaries: | r-release (arm64): seqinr_4.2-36.tgz, r-oldrel (arm64): seqinr_4.2-36.tgz, r-release (x86_64): seqinr_4.2-36.tgz, r-oldrel (x86_64): seqinr_4.2-36.tgz |
| Old sources: | seqinr archive |
| Reverse depends: | Autoplotprotein, DCODE, EnsCat, GeneGA, LSPFP, MethTargetedNGS, plotprotein, rnaCrosslinkOO, sangeranalyseR, SMM, specL |
| Reverse imports: | adegenet, agvgd, alakazam, aLFQ, AllelicImbalance, AmyloGram, AnnotationBustR, appreci8R, artMS, beautier, CellBarcode, circRNAprofiler, cleanUpdTSeq, coil, copyseparator, CovidMutations, CRISPRseek, debar, deepredeff, drimmR, effectR, EnvNJ, EpiSemble, evobiR, GB5mcPred, GenomicSig, gkmSVM, gquad, HextractoR, hoardeR, IMMAN, insect, IntEREst, itol.toolkit, LncFinder, longreadvqs, MAGNAMWAR, metaCluster, methylscaper, MSA2dist, netmhc2pan, OpEnHiMR, openPrimeR, orthGS, Platypus, prozor, PTXQC, RHybridFinder, seq2R, shazam, signalHsmm, sitePath, smmR, sscu, surfaltr, SynMut, vhcub, vivaldi, wavClusteR |
| Reverse suggests: | biomartr, ChIPpeakAnno, cubfits, dartR, dartR.base, disprose, file2meco, idpr, midasHLA, MiRaGE, MiscMetabar, msa, phangorn, ProteoDisco, RScelestial, tidysq, vhica |
| Reverse enhances: | spgs |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.