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'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAUti 2' (which is part of 'BEAST2') is a GUI tool that allows users to specify the many possible setups and generates the XML file 'BEAST2' needs to run. This package provides a way to create 'BEAST2' input files without active user input, but using R function calls instead.
Version: | 2.6.12 |
Imports: | ape, rappdirs, purrr, rlang (≥ 1.1.0), seqinr, stringr |
Suggests: | knitr, markdown, readr, rmarkdown, testthat (≥ 2.1.0) |
Published: | 2024-04-01 |
DOI: | 10.32614/CRAN.package.beautier |
Author: | Richèl J.C. Bilderbeek [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/ropensci/onboarding/issues/209), Paul Van Els [ctb], Raphael Scherrer [ctb], Yacine B. Chehida [ctb], Katharine S. Walter [ctb], Gary Napier [ctb], Jason Griffiths [ctb], Thijs Janzen [ctb], Pedro Taucce [ctb], Olivier Roy [ctb], Jana Riederer [ctb] |
Maintainer: | Richèl J.C. Bilderbeek <rjcbilderbeek at gmail.com> |
BugReports: | https://github.com/ropensci/beautier/issues |
License: | GPL-3 |
URL: | https://docs.ropensci.org/beautier/, https://github.com/ropensci/beautier |
NeedsCompilation: | no |
Language: | en-US |
Citation: | beautier citation info |
In views: | Phylogenetics |
CRAN checks: | beautier results |
Reference manual: | beautier.pdf |
Vignettes: |
beautier demo Examples Inference Models |
Package source: | beautier_2.6.12.tar.gz |
Windows binaries: | r-devel: beautier_2.6.12.zip, r-release: beautier_2.6.12.zip, r-oldrel: beautier_2.6.12.zip |
macOS binaries: | r-release (arm64): beautier_2.6.12.tgz, r-oldrel (arm64): beautier_2.6.12.tgz, r-release (x86_64): beautier_2.6.12.tgz, r-oldrel (x86_64): beautier_2.6.12.tgz |
Old sources: | beautier archive |
Reverse depends: | babette |
Reverse imports: | beastier, mcbette, nodeSub |
Reverse suggests: | mauricer |
Please use the canonical form https://CRAN.R-project.org/package=beautier to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.