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babette: Control 'BEAST2'

'BEAST2' (<https://www.beast2.org>) is a widely used Bayesian phylogenetic tool, that uses DNA/RNA/protein data and many model priors to create a posterior of jointly estimated phylogenies and parameters. 'BEAST2' is commonly accompanied by 'BEAUti 2', 'Tracer' and 'DensiTree'. 'babette' provides for an alternative workflow of using all these tools separately. This allows doing complex Bayesian phylogenetics easily and reproducibly from 'R'.

Version: 2.3.4
Depends: beautier (≥ 2.6.12), beastier (≥ 2.5), mauricer (≥ 2.5.2), R (≥ 3.5.0), tracerer
Imports: phangorn, rlang (≥ 1.1.0), stringr, xml2
Suggests: ape, ggplot2, knitr, lintr, nLTT, rappdirs, rmarkdown, spelling, testthat (≥ 2.1.0)
Published: 2024-06-25
DOI: 10.32614/CRAN.package.babette
Author: Richèl J.C. Bilderbeek ORCID iD [aut, cre], Joëlle Barido-Sottani [rev] (Joëlle reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209), David Winter [rev] (David reviewed the package for rOpenSci, see https://github.com/richelbilderbeek/onboarding/issues/209), Jason Griffiths ORCID iD [ctb], Olivier Roy [ctb], Giovanni Laudanno [ctb]
Maintainer: Richèl J.C. Bilderbeek <rjcbilderbeek at gmail.com>
BugReports: https://github.com/ropensci/babette/issues
License: GPL-3
URL: https://docs.ropensci.org/babette/ (website), https://github.com/ropensci/babette
NeedsCompilation: no
SystemRequirements: BEAST2 (https://www.beast2.org/)
Language: en-US
Citation: babette citation info
In views: Phylogenetics
CRAN checks: babette results

Documentation:

Reference manual: babette.pdf
Vignettes: babette demo
Examples
Nested Sampling
babette: Step by Step
babette Tutorial

Downloads:

Package source: babette_2.3.4.tar.gz
Windows binaries: r-devel: babette_2.3.4.zip, r-release: babette_2.3.4.zip, r-oldrel: babette_2.3.4.zip
macOS binaries: r-release (arm64): babette_2.3.4.tgz, r-oldrel (arm64): babette_2.3.4.tgz, r-release (x86_64): babette_2.3.4.tgz, r-oldrel (x86_64): babette_2.3.4.tgz
Old sources: babette archive

Reverse dependencies:

Reverse imports: mcbette

Linking:

Please use the canonical form https://CRAN.R-project.org/package=babette to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.