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nLTT: Calculate the NLTT Statistic

Provides functions to calculate the normalised Lineage-Through- Time (nLTT) statistic, given two phylogenetic trees. The nLTT statistic measures the difference between two Lineage-Through-Time curves, where each curve is normalised both in time and in number of lineages.

Version:	1.4.9
Imports:	ape, coda, testit
Suggests:	TreeSim, DDD, ggplot2, Hmisc, knitr, lintr, microbenchmark, plyr, reshape2, rmarkdown, TESS, testthat, DAISIE
Published:	2023-08-21
DOI:	10.32614/CRAN.package.nLTT
Author:	Thijs Janzen [aut, cre], Richèl J.C. Bilderbeek [aut], Pedro Neves [ctb]
Maintainer:	Thijs Janzen <thijsjanzen at gmail.com>
BugReports:	https://github.com/thijsjanzen/nLTT/issues
License:	GPL-2
URL:	https://github.com/thijsjanzen/nLTT
NeedsCompilation:	no
In views:	Phylogenetics
CRAN checks:	nLTT results

Documentation:

Reference manual:	nLTT.pdf
Vignettes:	How to visualize nLTT values distributions nltt_diff functions How to plot multiple nLTTs and their average How to stretch an nLTT timepoints matrix Trees with a root edge Walkthrough

Downloads:

Package source:	nLTT_1.4.9.tar.gz
Windows binaries:	r-devel: nLTT_1.4.9.zip, r-release: nLTT_1.4.9.zip, r-oldrel: nLTT_1.4.9.zip
macOS binaries:	r-release (arm64): nLTT_1.4.9.tgz, r-oldrel (arm64): nLTT_1.4.9.tgz, r-release (x86_64): nLTT_1.4.9.tgz, r-oldrel (x86_64): nLTT_1.4.9.tgz
Old sources:	nLTT archive

Reverse dependencies:

Reverse suggests:

babette, mcbette, nodeSub, treestats

Linking:

Please use the canonical form https://CRAN.R-project.org/package=nLTT to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.