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DAISIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) <doi:10.1111/ele.12461>.

Version: 4.4.1
Depends: R (≥ 4.2.0)
Imports: deSolve, graphics, stats, utils, DDD (≥ 5.0), subplex, Matrix, tensor, pracma, testit, foreach, doParallel, magrittr, parallel, Rcpp (≥ 1.0.10)
LinkingTo: Rcpp, RcppEigen, BH (≥ 1.81.0-1)
Suggests: covr, testthat (≥ 2.1.0), knitr, rmarkdown, gridExtra, dplyr, ggplot2, ggtree (≥ 3.0.0), tidytree, tidyr, purrr, ape, phytools, tibble
Enhances: doMC
Published: 2023-10-21
DOI: 10.32614/CRAN.package.DAISIE
Author: Rampal S. Etienne ORCID iD [aut, cre], Luis Valente ORCID iD [aut], Albert B. Phillimore ORCID iD [aut], Bart Haegeman ORCID iD [aut], Joshua W. Lambert ORCID iD [aut], Pedro Santos Neves ORCID iD [aut], Shu Xie ORCID iD [aut], Richèl J.C. Bilderbeek ORCID iD [aut], Hanno Hildenbrandt ORCID iD [aut], Torsten Hauffe ORCID iD [ctb], Giovanni Laudanno ORCID iD [ctb], Nadiah Kristensen ORCID iD [ctb], Raphael Scherrer ORCID iD [ctb]
Maintainer: Rampal S. Etienne <r.s.etienne at rug.nl>
BugReports: https://github.com/rsetienne/DAISIE/issues
License: GPL (≥ 3) | file LICENSE
Copyright: See the file COPYRIGHTS for various DAISIE copyright details
DAISIE copyright details
URL: https://github.com/rsetienne/DAISIE, https://rsetienne.github.io/DAISIE/
NeedsCompilation: yes
SystemRequirements: C++17
Materials: NEWS
CRAN checks: DAISIE results

Documentation:

Reference manual: DAISIE.pdf
Vignettes: Demo: Fitting clade-specific and island-wide diversity-dependence models in DAISIE
Demo optimizing parameters
Demo simulating islands
DAISIE 'stac' values

Downloads:

Package source: DAISIE_4.4.1.tar.gz
Windows binaries: r-devel: DAISIE_4.4.1.zip, r-release: DAISIE_4.4.1.zip, r-oldrel: DAISIE_4.4.1.zip
macOS binaries: r-release (arm64): DAISIE_4.4.1.tgz, r-oldrel (arm64): DAISIE_4.4.1.tgz, r-release (x86_64): DAISIE_4.4.1.tgz, r-oldrel (x86_64): DAISIE_4.4.1.tgz
Old sources: DAISIE archive

Reverse dependencies:

Reverse imports: DAISIEprep
Reverse suggests: nLTT

Linking:

Please use the canonical form https://CRAN.R-project.org/package=DAISIE to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.