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Simulates and computes the (maximum) likelihood of a dynamical model of island biota assembly through speciation, immigration and extinction. See Valente et al. (2015) <doi:10.1111/ele.12461>.
Version: | 4.4.1 |
Depends: | R (≥ 4.2.0) |
Imports: | deSolve, graphics, stats, utils, DDD (≥ 5.0), subplex, Matrix, tensor, pracma, testit, foreach, doParallel, magrittr, parallel, Rcpp (≥ 1.0.10) |
LinkingTo: | Rcpp, RcppEigen, BH (≥ 1.81.0-1) |
Suggests: | covr, testthat (≥ 2.1.0), knitr, rmarkdown, gridExtra, dplyr, ggplot2, ggtree (≥ 3.0.0), tidytree, tidyr, purrr, ape, phytools, tibble |
Enhances: | doMC |
Published: | 2023-10-21 |
DOI: | 10.32614/CRAN.package.DAISIE |
Author: | Rampal S. Etienne [aut, cre], Luis Valente [aut], Albert B. Phillimore [aut], Bart Haegeman [aut], Joshua W. Lambert [aut], Pedro Santos Neves [aut], Shu Xie [aut], Richèl J.C. Bilderbeek [aut], Hanno Hildenbrandt [aut], Torsten Hauffe [ctb], Giovanni Laudanno [ctb], Nadiah Kristensen [ctb], Raphael Scherrer [ctb] |
Maintainer: | Rampal S. Etienne <r.s.etienne at rug.nl> |
BugReports: | https://github.com/rsetienne/DAISIE/issues |
License: | GPL (≥ 3) | file LICENSE |
Copyright: | See the file COPYRIGHTS for various DAISIE copyright details DAISIE copyright details |
URL: | https://github.com/rsetienne/DAISIE, https://rsetienne.github.io/DAISIE/ |
NeedsCompilation: | yes |
SystemRequirements: | C++17 |
Materials: | NEWS |
CRAN checks: | DAISIE results |
Reference manual: | DAISIE.pdf |
Vignettes: |
Demo: Fitting clade-specific and island-wide diversity-dependence models in DAISIE Demo optimizing parameters Demo simulating islands DAISIE 'stac' values |
Package source: | DAISIE_4.4.1.tar.gz |
Windows binaries: | r-devel: DAISIE_4.4.1.zip, r-release: DAISIE_4.4.1.zip, r-oldrel: DAISIE_4.4.1.zip |
macOS binaries: | r-release (arm64): DAISIE_4.4.1.tgz, r-oldrel (arm64): DAISIE_4.4.1.tgz, r-release (x86_64): DAISIE_4.4.1.tgz, r-oldrel (x86_64): DAISIE_4.4.1.tgz |
Old sources: | DAISIE archive |
Reverse imports: | DAISIEprep |
Reverse suggests: | nLTT |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.