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tidytree: A Tidy Tool for Phylogenetic Tree Data Manipulation
Phylogenetic tree generally contains multiple components including node, edge, branch and associated data. 'tidytree' provides an approach to convert tree object to tidy data frame as well as provides tidy interfaces to manipulate tree data.
| Version: |
0.4.6 |
| Depends: |
R (≥ 3.4.0) |
| Imports: |
ape, dplyr, lazyeval, magrittr, methods, rlang, tibble, tidyr, tidyselect, yulab.utils (≥ 0.0.4), pillar, cli |
| Suggests: |
knitr, rmarkdown, prettydoc, testthat, utils |
| Published: |
2023-12-12 |
| DOI: |
10.32614/CRAN.package.tidytree |
| Author: |
Guangchuang Yu 
[aut, cre, cph],
Bradley Jones [ctb],
Zebulun Arendsee [ctb] |
| Maintainer: |
Guangchuang Yu <guangchuangyu at gmail.com> |
| BugReports: |
https://github.com/YuLab-SMU/tidytree/issues |
| License: |
Artistic-2.0 |
| URL: |
https://www.amazon.com/Integration-Manipulation-Visualization-Phylogenetic-Computational-ebook/dp/B0B5NLZR1Z/ |
| NeedsCompilation: |
no |
| Citation: |
tidytree citation info |
| Materials: |
NEWS |
| In views: |
Phylogenetics |
| CRAN checks: |
tidytree results |
Documentation:
Downloads:
Reverse dependencies:
| Reverse imports: |
avotrex, FossilSim, ggtree, ggtreeDendro, ggtreeExtra, iNEXT.3D, iNEXT.beta3D, miaViz, MicrobiotaProcess, oppr, RevGadgets, sitePath, treeio |
| Reverse suggests: |
compcodeR, DAISIE, nosoi, pctax, Platypus |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.