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FossilSim: Simulation and Plots for Fossil and Taxonomy Data

Simulating and plotting taxonomy and fossil data on phylogenetic trees under mechanistic models of speciation, preservation and sampling.

Version: 2.4.1
Depends: R (≥ 2.10)
Imports: ape, ggtree, ggfun, ggplot2, tidytree, methods, rlang
Suggests: paleotree, knitr, rmarkdown, devtools, TreeSim, treeio, ggrepel
Published: 2024-10-02
DOI: 10.32614/CRAN.package.FossilSim
Author: Rachel Warnock [aut, cph], Joelle Barido-Sottani [aut, cre, cph], Walker Pett [aut, cph], O'Reilly Joseph [aut, cph], Ugnė Stolz [aut, cph]
Maintainer: Joelle Barido-Sottani <joelle.barido-sottani at m4x.org>
License: GPL-3
NeedsCompilation: no
Language: en-GB
Materials: README NEWS
In views: Paleontology, Phylogenetics
CRAN checks: FossilSim results

Documentation:

Reference manual: FossilSim.pdf
Vignettes: Exporting sampled ancestor trees (source, R code)
Simulating fossils (source, R code)
Introduction to FossilSim (source, R code)
Converting from and to paleotree format (source, R code)
Simulating trees from the fossilized birth-death process (source, R code)
Simulating taxonomy (source, R code)

Downloads:

Package source: FossilSim_2.4.1.tar.gz
Windows binaries: r-devel: FossilSim_2.4.1.zip, r-release: FossilSim_2.4.1.zip, r-oldrel: FossilSim_2.4.1.zip
macOS binaries: r-release (arm64): FossilSim_2.4.1.tgz, r-oldrel (arm64): FossilSim_2.4.1.tgz, r-release (x86_64): FossilSim_2.4.1.tgz, r-oldrel (x86_64): FossilSim_2.4.1.tgz
Old sources: FossilSim archive

Reverse dependencies:

Reverse imports: FossilSimShiny

Linking:

Please use the canonical form https://CRAN.R-project.org/package=FossilSim to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.