The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

treestats: Phylogenetic Tree Statistics

Collection of phylogenetic tree statistics, collected throughout the literature. All functions have been written to maximize computation speed. The package includes umbrella functions to calculate all statistics, all balance associated statistics, or all branching time related statistics. Furthermore, the 'treestats' package supports summary statistic calculations on Ltables, provides speed-improved coding of branching times, Ltable conversion and includes algorithms to create intermediately balanced trees. Full description can be found in Janzen (2024) <doi:10.1016/j.ympev.2024.108168>.

Version: 1.70.5
Depends: Rcpp
Imports: ape, nloptr
LinkingTo: Rcpp, nloptr
Suggests: phyloTop, testthat, DDD, geiger, nLTT, castor, adephylo, ggplot2, tibble, picante, treebalance, RPANDA, lintr, rmarkdown, knitr, igraph, RSpectra, Matrix, abcrf, pheatmap
Published: 2024-08-26
DOI: 10.32614/CRAN.package.treestats
Author: Thijs Janzen ORCID iD [cre, aut]
Maintainer: Thijs Janzen <thijsjanzen at gmail.com>
BugReports: https://github.com/thijsjanzen/treestats/issues
License: GPL-3
URL: https://github.com/thijsjanzen/treestats, https://thijsjanzen.github.io/treestats/
NeedsCompilation: yes
Citation: treestats citation info
Materials: README NEWS
In views: Phylogenetics
CRAN checks: treestats results

Documentation:

Reference manual: treestats.pdf
Vignettes: Example: abc (source, R code)
Example: data (source, R code)
Getting started (source, R code)
Speed improvement (source, R code)

Downloads:

Package source: treestats_1.70.5.tar.gz
Windows binaries: r-devel: treestats_1.70.5.zip, r-release: treestats_1.70.5.zip, r-oldrel: treestats_1.70.5.zip
macOS binaries: r-release (arm64): treestats_1.70.5.tgz, r-oldrel (arm64): treestats_1.70.5.tgz, r-release (x86_64): treestats_1.70.5.tgz, r-oldrel (x86_64): treestats_1.70.5.tgz
Old sources: treestats archive

Reverse dependencies:

Reverse imports: secsse

Linking:

Please use the canonical form https://CRAN.R-project.org/package=treestats to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.