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Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.
| Version: | 1.19.0 |
| Depends: | R (≥ 3.0.0) |
| Imports: | utils, stats, datasets, magrittr (≥ 1.0.1), ggplot2, viridis |
| Suggests: | knitr, rmarkdown, testthat, seriation, colorspace, ape, microbenchmark, gplots, heatmaply, dynamicTreeCut, pvclust, corrplot, DendSer, MASS, cluster, fpc, circlize (≥ 0.2.5), covr |
| Enhances: | ggdendro, dendroextras, Hmisc, data.table, rpart, WGCNA, moduleColor, distory, phangorn, zoo |
| Published: | 2024-11-15 |
| DOI: | 10.32614/CRAN.package.dendextend |
| Author: | Tal Galili [aut, cre, cph] (https://www.r-statistics.com), Yoav Benjamini [ths], Gavin Simpson [ctb], Gregory Jefferis [aut, ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Cath [ctb] (https://github.com/CathG), John Ma [ctb] (https://github.com/JohnMCMa), Krzysiek G [ctb] (https://github.com/storaged), Manuela Hummel [ctb] (https://github.com/hummelma), Chase Clark [ctb] (https://github.com/chasemc), Lucas Graybuck [ctb] (https://github.com/hypercompetent), jdetribol [ctb] (https://github.com/jdetribol), Ben Ho [ctb] (https://github.com/SplitInf), Samuel Perreault [ctb] (https://github.com/samperochkin), Christian Hennig [ctb] (http://www.homepages.ucl.ac.uk/~ucakche/), David Bradley [ctb] (https://github.com/DBradley27), Houyun Huang [ctb] (https://github.com/houyunhuang), Patrick Schupp [ctb] (https://github.com/pschupp), Alec Buetow [ctb] (https://github.com/alecbuetow) |
| Maintainer: | Tal Galili <tal.galili at gmail.com> |
| BugReports: | https://github.com/talgalili/dendextend/issues |
| License: | GPL-2 | GPL-3 |
| URL: | https://talgalili.github.io/dendextend/, https://github.com/talgalili/dendextend/, https://cran.r-project.org/package=dendextend, https://www.r-statistics.com/tag/dendextend/, https://doi.org/10.1093/bioinformatics/btv428 |
| NeedsCompilation: | no |
| Citation: | dendextend citation info |
| Materials: | README NEWS ChangeLog |
| In views: | Cluster, Phylogenetics |
| CRAN checks: | dendextend results |
| Package source: | dendextend_1.19.0.tar.gz |
| Windows binaries: | r-devel: dendextend_1.19.0.zip, r-release: dendextend_1.19.0.zip, r-oldrel: dendextend_1.19.0.zip |
| macOS binaries: | r-release (arm64): dendextend_1.19.0.tgz, r-oldrel (arm64): dendextend_1.19.0.tgz, r-release (x86_64): dendextend_1.19.0.tgz, r-oldrel (x86_64): dendextend_1.19.0.tgz |
| Old sources: | dendextend archive |
| Reverse depends: | DeMixT, EnsCat, PdPDB, uclust |
| Reverse imports: | adjclust, BasketballAnalyzeR, BiBitR, CALANGO, CellTrails, ChAMP, CHETAH, CINNA, Cluster.OBeu, conos, consensusDE, COTAN, DEGreport, didec, ecan, EGAnet, elaborator, evaluomeR, factoextra, GeneNMF, GeneTonic, GlobalAncova, GOpro, GSEAmining, HCD, heatmaply, hfr, HGC, ILoReg, INFOSET, InterCellar, kanjistat, ldaPrototype, mappoly, Mercator, metaprotr, mFD, Momocs, multiClust, numbat, omXplore, onemap, PhosR, pRoloc, rainette, rnmamod, rSAFE, SISIR, tidyHeatmap, tsibbletalk, visxhclust, Xplortext, YAPSA |
| Reverse suggests: | AntMAN, celltrackR, circlize, ClustAssess, cola, ComplexHeatmap, DAPAR, DatabionicSwarm, dbscan, FCPS, HMP16SData, IncDTW, isocat, kmer, MAGeCKFlute, mdendro, moRphomenses, packFinder, phylogram, plotly, ProjectionBasedClustering, protti, rare, sarp.snowprofile.alignment, scGPS, segregation, seriation, sharpshootR, sits, spatialHeatmap, spiralize, TreeAndLeaf, variancePartition, VecDep |
Please use the canonical form https://CRAN.R-project.org/package=dendextend to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.