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Implements a method to combine multiple levels of multiple sequence alignment to uncover the structure of complex DNA rearrangements.
| Version: | 0.9.2 |
| Depends: | R (≥ 4.4) |
| Imports: | methods, graphics, grDevices, oompaBase, Biostrings, NameNeedle, dendextend, ape, stringr, igraph, Polychrome, colorspace |
| Suggests: | msa, viridisLite, R.rsp, knitr, rmarkdown |
| Published: | 2025-09-24 |
| DOI: | 10.32614/CRAN.package.SVAlignR |
| Author: | Kevin R. Coombes [aut, cre] |
| Maintainer: | Kevin R. Coombes <krc at silicovore.com> |
| License: | Apache License (== 2.0) |
| URL: | http://oompa.r-forge.r-project.org/ |
| NeedsCompilation: | no |
| CRAN checks: | SVAlignR results |
| Reference manual: | SVAlignR.html , SVAlignR.pdf |
| Vignettes: |
SVAlignR and Virus-Associated Cancer (source) |
| Package source: | SVAlignR_0.9.2.tar.gz |
| Windows binaries: | r-devel: SVAlignR_0.9.2.zip, r-release: SVAlignR_0.9.2.zip, r-oldrel: SVAlignR_0.9.2.zip |
| macOS binaries: | r-release (arm64): SVAlignR_0.9.2.tgz, r-oldrel (arm64): SVAlignR_0.9.2.tgz, r-release (x86_64): SVAlignR_0.9.2.tgz, r-oldrel (x86_64): SVAlignR_0.9.2.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.