The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of k-mer counting methods and applications for biological sequence analysis.
| Version: | 1.1.2 |
| Imports: | openssl, phylogram, Rcpp (≥ 0.12.13) |
| LinkingTo: | Rcpp |
| Suggests: | ape (≥ 4.0), dendextend, knitr, rmarkdown, testthat |
| Published: | 2019-05-20 |
| DOI: | 10.32614/CRAN.package.kmer |
| Author: | Shaun Wilkinson [aut, cre] |
| Maintainer: | Shaun Wilkinson <shaunpwilkinson at gmail.com> |
| BugReports: | http://github.com/shaunpwilkinson/kmer/issues |
| License: | GPL-3 |
| URL: | http://github.com/shaunpwilkinson/kmer |
| NeedsCompilation: | yes |
| Citation: | kmer citation info |
| Materials: | README |
| CRAN checks: | kmer results |
| Reference manual: | kmer.pdf |
| Vignettes: |
Introduction to the kmer package |
| Package source: | kmer_1.1.2.tar.gz |
| Windows binaries: | r-devel: kmer_1.1.2.zip, r-release: kmer_1.1.2.zip, r-oldrel: kmer_1.1.2.zip |
| macOS binaries: | r-release (arm64): kmer_1.1.2.tgz, r-oldrel (arm64): kmer_1.1.2.tgz, r-release (x86_64): kmer_1.1.2.tgz, r-oldrel (x86_64): kmer_1.1.2.tgz |
| Old sources: | kmer archive |
| Reverse imports: | aphid, copyseparator, insect, packFinder |
| Reverse suggests: | Platypus |
Please use the canonical form https://CRAN.R-project.org/package=kmer to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.