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Assembles two or more gene copies from short-read Next-Generation Sequencing data. Works best when there are only two gene copies and read length >=250 base pairs. High and relatively even coverage are important.
| Version: | 1.2.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | ape, seqinr, stringr, kmer, DECIPHER, beepr, Biostrings, grDevices, doParallel, foreach, parallel |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2022-11-25 |
| DOI: | 10.32614/CRAN.package.copyseparator |
| Author: | Lei Yang |
| Maintainer: | Lei Yang <leiyangslu at gmail.com> |
| BugReports: | https://github.com/LeiYang-Fish/copyseparator/issues |
| License: | GPL-2 |
| URL: | https://github.com/LeiYang-Fish/copyseparator |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | copyseparator results |
| Reference manual: | copyseparator.pdf |
| Vignettes: |
Usage_of_copyseparator |
| Package source: | copyseparator_1.2.0.tar.gz |
| Windows binaries: | r-devel: copyseparator_1.2.0.zip, r-release: copyseparator_1.2.0.zip, r-oldrel: copyseparator_1.2.0.zip |
| macOS binaries: | r-release (arm64): copyseparator_1.2.0.tgz, r-oldrel (arm64): copyseparator_1.2.0.tgz, r-release (x86_64): copyseparator_1.2.0.tgz, r-oldrel (x86_64): copyseparator_1.2.0.tgz |
| Old sources: | copyseparator archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.