The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Analysis of molecular marker data from model (backcrosses, F2 and recombinant inbred lines) and non-model systems (i. e. outcrossing species). For the later, it allows statistical analysis by simultaneously estimating linkage and linkage phases (genetic map construction) according to Wu et al. (2002) <doi:10.1006/tpbi.2002.1577>. All analysis are based on multipoint approaches using hidden Markov models.
Version: | 3.0.0 |
Depends: | R (≥ 3.6.0) |
Imports: | ggplot2 (≥ 2.2.1), plotly (≥ 4.7.1), reshape2 (≥ 1.4.1), Rcpp (≥ 0.10.5), graphics, methods, stats, utils, grDevices, smacof, princurve, parallel, dplyr, tidyr, htmlwidgets, ggpubr, RColorBrewer, dendextend, rebus, vcfR (≥ 1.6.0) |
LinkingTo: | Rcpp (≥ 0.10.5) |
Suggests: | knitr (≥ 1.10), rmarkdown, testthat, stringr |
Published: | 2022-11-26 |
DOI: | 10.32614/CRAN.package.onemap |
Author: | Gabriel Margarido [aut], Marcelo Mollinari [aut], Cristiane Taniguti [ctb, cre], Getulio Ferreira [ctb], Rodrigo Amadeu [ctb], Karl Broman [ctb], Katharine Preedy [ctb, cph] (MDS ordering algorithm), Bastian Schiffthaler [ctb, cph] (HMM parallelization), Augusto Garcia [aut, ctb] |
Maintainer: | Cristiane Taniguti <chtaniguti at tamu.edu> |
BugReports: | https://github.com/augusto-garcia/onemap/wiki |
License: | GPL-3 |
URL: | https://github.com/augusto-garcia/onemap |
NeedsCompilation: | yes |
Citation: | onemap citation info |
In views: | Agriculture |
CRAN checks: | onemap results |
Reference manual: | onemap.pdf |
Vignettes: |
Inbred Based Populations Introduction to R Outcrossing Populations Overview |
Package source: | onemap_3.0.0.tar.gz |
Windows binaries: | r-devel: onemap_3.0.0.zip, r-release: onemap_3.0.0.zip, r-oldrel: onemap_3.0.0.zip |
macOS binaries: | r-release (arm64): onemap_3.0.0.tgz, r-oldrel (arm64): onemap_3.0.0.tgz, r-release (x86_64): onemap_3.0.0.tgz, r-oldrel (x86_64): onemap_3.0.0.tgz |
Old sources: | onemap archive |
Please use the canonical form https://CRAN.R-project.org/package=onemap to link to this page.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.