The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

WGCNA: Weighted Correlation Network Analysis

Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization.

Version: 1.73
Depends: R (≥ 3.0), dynamicTreeCut (≥ 1.62), fastcluster
Imports: stats, grDevices, utils, matrixStats (≥ 0.8.1), Hmisc, impute, splines, foreach, doParallel, preprocessCore, survival, parallel, GO.db, AnnotationDbi, Rcpp (≥ 0.11.0)
LinkingTo: Rcpp
Suggests: org.Hs.eg.db, org.Mm.eg.db, infotheo, entropy, minet
Published: 2024-09-18
DOI: 10.32614/CRAN.package.WGCNA
Author: Peter Langfelder [aut, cre], Steve Horvath [aut], Chaochao Cai [aut], Jun Dong [aut], Jeremy Miller [aut], Lin Song [aut], Andy Yip [aut], Bin Zhang [aut]
Maintainer: Peter Langfelder <Peter.Langfelder at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: WGCNA citation info
Materials: ChangeLog
In views: Omics
CRAN checks: WGCNA results

Documentation:

Reference manual: WGCNA.pdf

Downloads:

Package source: WGCNA_1.73.tar.gz
Windows binaries: r-devel: WGCNA_1.73.zip, r-release: WGCNA_1.73.zip, r-oldrel: WGCNA_1.73.zip
macOS binaries: r-release (arm64): WGCNA_1.73.tgz, r-oldrel (arm64): WGCNA_1.73.tgz, r-release (x86_64): WGCNA_1.73.tgz, r-oldrel (x86_64): WGCNA_1.73.tgz
Old sources: WGCNA archive

Reverse dependencies:

Reverse depends: diffcoexp, NetSAM
Reverse imports: BioM2, BioNAR, BioNERO, CEMiTool, csdR, DiPALM, DrDimont, eclust, fastLiquidAssociation, FREEtree, GmicR, GWENA, iNETgrate, MCbiclust, miRSM, MODA, MRPC, multiWGCNA, netboost, Patterns, Pigengene, RegEnrich, scpoisson, seq2pathway, SPsimSeq, TIN
Reverse suggests: ADAPTS, BioCor, cola, DDPNA, fuzzyforest, GRaNIE, gsean, HiContacts, maGUI, scde, scGPS, scITD, spatialHeatmap, TRexSelector
Reverse enhances: dendextend

Linking:

Please use the canonical form https://CRAN.R-project.org/package=WGCNA to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.