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Individual gene expression patterns are encoded into a series of eigenvector patterns ('WGCNA' package). Using the framework of linear model-based differential expression comparisons ('limma' package), time-course expression patterns for genes in different conditions are compared and analyzed for significant pattern changes. For reference, see: Greenham K, Sartor RC, Zorich S, Lou P, Mockler TC and McClung CR. eLife. 2020 Sep 30;9(4). <doi:10.7554/eLife.58993>.
| Version: | 1.2 |
| Depends: | R (≥ 2.10) |
| Imports: | limma, WGCNA, ggplot2 |
| Suggests: | edgeR |
| Published: | 2022-06-27 |
| DOI: | 10.32614/CRAN.package.DiPALM |
| Author: | Ryan C. Sartor, Kathleen Greenham |
| Maintainer: | Ryan C. Sartor <sartorry at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| Citation: | DiPALM citation info |
| In views: | Omics |
| CRAN checks: | DiPALM results |
| Reference manual: | DiPALM.pdf |
| Package source: | DiPALM_1.2.tar.gz |
| Windows binaries: | r-devel: DiPALM_1.2.zip, r-release: DiPALM_1.2.zip, r-oldrel: DiPALM_1.2.zip |
| macOS binaries: | r-release (arm64): DiPALM_1.2.tgz, r-oldrel (arm64): DiPALM_1.2.tgz, r-release (x86_64): DiPALM_1.2.tgz, r-oldrel (x86_64): DiPALM_1.2.tgz |
| Old sources: | DiPALM archive |
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These binaries (installable software) and packages are in development.
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