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Methods for fitting macroevolutionary models to phylogenetic trees Pennell (2014) <doi:10.1093/bioinformatics/btu181>.
| Version: | 2.0.11 |
| Depends: | ape (≥ 3.0-6), R (≥ 2.15.0), phytools (≥ 1.5-1) |
| Imports: | MASS, mvtnorm, subplex, deSolve (≥ 1.7), digest, Rcpp (≥ 0.11.0), coda, ncbit, colorspace, methods |
| LinkingTo: | Rcpp |
| Suggests: | TreeSim |
| Published: | 2023-04-03 |
| DOI: | 10.32614/CRAN.package.geiger |
| Author: | Luke Harmon, Matthew Pennell, Chad Brock, Joseph Brown, Wendell Challenger, Jon Eastman, Rich FitzJohn, Rich Glor, Gene Hunt, Liam Revell, Graham Slater, Josef Uyeda, Jason Weir and CRAN team (corrections in 2022) |
| Maintainer: | Luke Harmon <lukeh at uidaho.edu> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | yes |
| Citation: | geiger citation info |
| Materials: | README ChangeLog |
| In views: | Phylogenetics |
| CRAN checks: | geiger results |
| Reference manual: | geiger.pdf |
| Package source: | geiger_2.0.11.tar.gz |
| Windows binaries: | r-devel: geiger_2.0.11.zip, r-release: geiger_2.0.11.zip, r-oldrel: geiger_2.0.11.zip |
| macOS binaries: | r-release (arm64): geiger_2.0.11.tgz, r-oldrel (arm64): geiger_2.0.11.tgz, r-release (x86_64): geiger_2.0.11.tgz, r-oldrel (x86_64): geiger_2.0.11.tgz |
| Old sources: | geiger archive |
| Reverse depends: | convevol, OUwie, surface, TreeSim, windex |
| Reverse imports: | evobiR, FishPhyloMaker, hilldiv, hillR, hisse, markophylo, nichevol, nodeSub, pmc, ppgm, ratematrix, secsse, sensiPhy, treats |
| Reverse suggests: | cauphy, diversitree, fishtree, pcmabc, phytools, RNeXML, treestats |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.