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Contains a number of comparative 'phylogenetic' methods, mostly focusing on analysing diversification and character evolution. Contains implementations of 'BiSSE' (Binary State 'Speciation' and Extinction) and its unresolved tree extensions, 'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE', 'GeoSSE', and 'BiSSE-ness' Other included methods include Markov models of discrete and continuous trait evolution and constant rate 'speciation' and extinction.
| Version: | 0.10-1 |
| Depends: | R (≥ 2.10), methods, ape |
| Imports: | deSolve (≥ 1.7), graphics, grDevices, stats, subplex, Rcpp (≥ 0.10.0) |
| LinkingTo: | Rcpp |
| Suggests: | numDeriv, minqa, lubridate, expm, caper, geiger |
| Published: | 2024-10-02 |
| DOI: | 10.32614/CRAN.package.diversitree |
| Author: | Richard G. FitzJohn [aut, cre], Emma Goldberg [aut], Karen Magnuson-Ford [aut], Roger Sidje [aut] |
| Maintainer: | Richard G. FitzJohn <rich.fitzjohn at gmail.com> |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://www.zoology.ubc.ca/prog/diversitree/ |
| NeedsCompilation: | yes |
| SystemRequirements: | fftw3 (>= 3.1.2), gsl (>= 1.15) |
| Citation: | diversitree citation info |
| Materials: | README ChangeLog |
| In views: | Phylogenetics |
| CRAN checks: | diversitree results |
| Reference manual: | diversitree.pdf |
| Package source: | diversitree_0.10-1.tar.gz |
| Windows binaries: | r-devel: diversitree_0.10-1.zip, r-release: diversitree_0.10-1.zip, r-oldrel: diversitree_0.10-1.zip |
| macOS binaries: | r-release (arm64): diversitree_0.10-1.tgz, r-oldrel (arm64): diversitree_0.10-1.tgz, r-release (x86_64): diversitree_0.10-1.tgz, r-oldrel (x86_64): diversitree_0.10-1.tgz |
| Old sources: | diversitree archive |
| Reverse imports: | HCTDesign, hisse, poweRbal |
| Reverse suggests: | DAISIEprep, fishtree, secsse |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.