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metaCluster: Metagenomic Clustering

Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.

Version: 0.1.1
Depends: R (≥ 3.6)
Imports: factoextra, cluster, dbscan, dplyr, seqinr, Biostrings
Published: 2024-06-20
DOI: 10.32614/CRAN.package.metaCluster
Author: Dipro Sinha [aut, cre], Sayanti Guha Majumdar [aut], Anu Sharma [aut], Dwijesh Chandra Mishra [aut], Md Yeasin [aut]
Maintainer: Dipro Sinha <diprosinha at gmail.com>
License: GPL-3
NeedsCompilation: no
CRAN checks: metaCluster results

Documentation:

Reference manual: metaCluster.pdf

Downloads:

Package source: metaCluster_0.1.1.tar.gz
Windows binaries: r-devel: metaCluster_0.1.1.zip, r-release: metaCluster_0.1.1.zip, r-oldrel: metaCluster_0.1.1.zip
macOS binaries: r-release (arm64): metaCluster_0.1.1.tgz, r-oldrel (arm64): metaCluster_0.1.1.tgz, r-release (x86_64): metaCluster_0.1.1.tgz, r-oldrel (x86_64): metaCluster_0.1.1.tgz
Old sources: metaCluster archive

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.