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Clustering in metagenomics is the process of grouping of microbial contigs in species specific bins. This package contains functions that extract genomic features from metagenome data, find the number of clusters for that given data and find the best clustering algorithm for binning.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.6) |
| Imports: | factoextra, cluster, dbscan, dplyr, seqinr, Biostrings |
| Published: | 2024-06-20 |
| DOI: | 10.32614/CRAN.package.metaCluster |
| Author: | Dipro Sinha [aut, cre], Sayanti Guha Majumdar [aut], Anu Sharma [aut], Dwijesh Chandra Mishra [aut], Md Yeasin [aut] |
| Maintainer: | Dipro Sinha <diprosinha at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| CRAN checks: | metaCluster results |
| Reference manual: | metaCluster.pdf |
| Package source: | metaCluster_0.1.1.tar.gz |
| Windows binaries: | r-devel: metaCluster_0.1.1.zip, r-release: metaCluster_0.1.1.zip, r-oldrel: metaCluster_0.1.1.zip |
| macOS binaries: | r-release (arm64): metaCluster_0.1.1.tgz, r-oldrel (arm64): metaCluster_0.1.1.tgz, r-release (x86_64): metaCluster_0.1.1.tgz, r-oldrel (x86_64): metaCluster_0.1.1.tgz |
| Old sources: | metaCluster archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.