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The "Vertical and Horizontal Inheritance Consistence Analysis" method is described in the following publication: "VHICA: a new method to discriminate between vertical and horizontal transposon transfer: application to the mariner family within Drosophila" by G. Wallau. et al. (2016) <doi:10.1093/molbev/msv341>. The purpose of the method is to detect horizontal transfers of transposable elements, by contrasting the divergence of transposable element sequences with that of regular genes.
| Version: | 0.2.8 |
| Suggests: | ape, plotrix, parallel, seqinr, gtools |
| Published: | 2023-03-08 |
| DOI: | 10.32614/CRAN.package.vhica |
| Author: | Arnaud Le Rouzic |
| Maintainer: | Arnaud Le Rouzic <arnaud.le-rouzic at universite-paris-saclay.fr> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Materials: | README |
| In views: | Omics |
| CRAN checks: | vhica results |
| Reference manual: | vhica.pdf |
| Package source: | vhica_0.2.8.tar.gz |
| Windows binaries: | r-devel: vhica_0.2.8.zip, r-release: vhica_0.2.8.zip, r-oldrel: vhica_0.2.8.zip |
| macOS binaries: | r-release (arm64): vhica_0.2.8.tgz, r-oldrel (arm64): vhica_0.2.8.tgz, r-release (x86_64): vhica_0.2.8.tgz, r-oldrel (x86_64): vhica_0.2.8.tgz |
| Old sources: | vhica archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.