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gkmSVM: Gapped-Kmer Support Vector Machine

Imports the 'gkmSVM' v2.0 functionalities into R <https://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. Users should note that the suggested packages 'rtracklayer', 'GenomicRanges', 'BSgenome', 'BiocGenerics', 'Biostrings', 'GenomeInfoDb', 'IRanges', and 'S4Vectors' are all BioConductor packages <https://bioconductor.org>.

Version: 0.83.0
Imports: kernlab, seqinr, utils, ROCR, Rcpp, grDevices, graphics, stats
LinkingTo: Rcpp
Suggests: rtracklayer, GenomicRanges, BSgenome, BSgenome.Hsapiens.UCSC.hg18.masked, BSgenome.Hsapiens.UCSC.hg19.masked, BiocGenerics, Biostrings, GenomeInfoDb, IRanges, S4Vectors
Published: 2023-08-20
DOI: 10.32614/CRAN.package.gkmSVM
Author: Mahmoud Ghandi
Maintainer: Mike Beer <mbeer at jhu.edu>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: gkmSVM results

Documentation:

Reference manual: gkmSVM.pdf

Downloads:

Package source: gkmSVM_0.83.0.tar.gz
Windows binaries: r-devel: gkmSVM_0.83.0.zip, r-release: gkmSVM_0.83.0.zip, r-oldrel: gkmSVM_0.83.0.zip
macOS binaries: r-release (arm64): gkmSVM_0.83.0.tgz, r-oldrel (arm64): gkmSVM_0.83.0.tgz, r-release (x86_64): gkmSVM_0.83.0.tgz, r-oldrel (x86_64): gkmSVM_0.83.0.tgz
Old sources: gkmSVM archive

Linking:

Please use the canonical form https://CRAN.R-project.org/package=gkmSVM to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.